Maize Small RNA Library Information

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Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
dcl5_1F_1_5mm Maize dcl5-1//Dcl5, CRISPR T2, 1.5 mm anthers, -1bp/wt, fertileSBS24,064,34813,084,0111,295,7772,272,48720M3418GSM3466686
dcl5_1F_2_0mm Maize dcl5-1//Dcl5, CRISPR T2, 2.0 mm anthers, -1bp/wt, fertileSBS43,109,92521,563,4911,938,1192,708,83420M3418GSM3466687
dcl5_1_1_5mm Maize dcl5-1, CRISPR T2, 1.5 mm anthers, -1bp/-1bp, partial sterileSBS22,909,8898,080,1381,745,0661,867,92820M3418GSM3466688
dcl5_1_2_0mm Maize dcl5-1, CRISPR T2, 2.0 mm anthers, -1bp/-1bp, partial sterileSBS14,688,1663,670,9431,166,994792,56820M3418GSM3466689
dcl5_2_1_5mm_a Maize dcl5-2, CRISPR T2, 1.5 mm anthers, -3bp/-3bp, partial sterileSBS36,666,13521,874,2822,584,4837,963,43620M3418GSM3466690
dcl5_2_2_0mm Maize dcl5-2, CRISPR T2, 2.0 mm anthers, -3bp/-3bp, partial sterileSBS13,636,5385,748,1331,079,5371,400,65320M3418GSM3466691
dcl5_3_1_5mm Maize dcl5-3, CRISPR T2, 1.5 mm anthers, -12bp/-12bp, sterileSBS24,861,76913,062,7791,747,8342,432,10720M3418GSM3466692
dcl5_3_2_0mm_a Maize dcl5-3, CRISPR T2, 2.0 mm anthers, -12bp/-12bp, sterileSBS13,250,9794,530,8731,435,439959,17020M3418GSM3466693
dcl5_3_2_0mm_b Maize dcl5-3, CRISPR T2, 2.0 mm anthers, -12bp/-12bp, sterileSBS30,523,22412,980,8393,212,2191,657,39420M3418GSM3466694
dcl5_4_1_5mm Maize dcl5-4, CRISPR T2, 1.5 mm anthers, 149bp/ 149bp, sterileSBS29,017,22914,565,5421,962,2833,413,41520M3418GSM3466695
dcl5_4_2_0mm Maize dcl5-4, CRISPR T2, 2.0 mm anthers, 149bp/ 149bp, sterileSBS20,242,4599,720,3531,815,0992,122,17020M3418GSM3466696
dcl5_5_1_5mm Maize dcl5-5, CRISPR T2, 1.5 mm anthers, -10 bp/-10 bp, partial sterile, rep #1SBS16,276,96911,721,4161,853,3141,723,64620M3418
dcl5_5_2_0mm Maize dcl5-5, CRISPR T2, 2.0 mm anthers, -10 bp/-10 bp, partial sterile, rep #2SBS13,238,8709,447,5802,123,6301,278,66820M3418
sTP_dcl5_1_2a Permissive temp (23C/20C); dcl5-1 spikelets w 2 mm anther in upper floret and 1 mm anther in lower floretSBS29,794,87021,322,6306,172,5361,026,96120M3418GSM3466697
sTP_dcl5_2_3a Permissive temp (23C/20C); dcl5-1 spikelets w 3 mm anther in upper floret and 2 mm anther in lower floretSBS24,254,39417,291,2425,218,0641,044,40820M3418GSM3466698
sTR_dcl5_1_2a Restrictive temp (28C/22C); dcl5-1 spikelets w 2 mm anther in upper floret and 1 mm anther in lower floretSBS37,967,13527,393,0677,315,5481,291,71320M3418GSM3466699
sTR_dcl5_2_3a Restrictive temp (28C/22C); dcl5-1 spikelets w 3 mm anther in upper floret and 2 mm anther in lower floretSBS28,087,71220,277,7855,586,846921,61320M3418GSM3466700
dcl5mu01_1 dcl5 illumina mu allele, mu-illumina_252772.6, ear number: M531-7, 1.5 - 2.0 mm anthersSBS20,342,30514,146,7081,441,8831,709,55520M3418
dcl5mu02_1 dcl5 illumina mu allele, mu-illumina_254833.6 ear number: R131-4/dcl5-4 bi-allelic allele, 1.5 - 2.0 mm anthersSBS17,886,29612,327,8821,582,5582,117,61320M3418
dcl5mu03_1 dcl5 illumina mu allele, mu-illumina_139042.7 Ear: V610-3, 1.5 - 2.0 mm anthersSBS15,643,58211,226,7471,531,7211,577,59120M3418
dcl5mu04_1 dcl5 illumina mu allele, ZJ701-7 (x) UFMu-03512, 1.5 - 2.0 mm anthersSBS21,016,30314,626,4921,779,0441,646,45120M3418
TR_W23_2_0mm_1 W23 in 28/22 C, 2.0 mm anthers, rep 1SBS18,465,09312,297,3401,531,6591,372,59820M3418
TR_W23_2_0mm_2 W23 in 28/22 C, 2.0 mm anthers, rep 2SBS19,111,68213,044,8401,549,7441,614,34420M3418
TP_W23_2_0mm_1 W23 in 22/20 C, 2.0 mm anthers, rep 1SBS17,897,30612,411,0351,523,1981,463,65420M3418
TP_W23_2_0mm_2 W23 in 22/20 C, 2.0 mm anthers, rep 2SBS19,865,45213,660,1391,671,4341,603,30620M3418



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50