Cassava small RNA miRNA Abundances

The data below are based on the microRNAs listed in the miRBase registry. Adjust libraries/reads to display on the control panel.

        

        miRNA         miRNA sequence Len Sum (norm) Average Max Min (>0)  Cassa_SteCassa_LfCassa_Calsm3684Msm3684_13F
mes-miR11891 CAUAAAUUGAACUAUAGACC 20 386 77 378 1    0 1 0 378 7
mes-miR11892 UUGUCAUCUCAACCUUGUGUC 21 382 76 176 20    111 176 33 42 20
mes-miR1446 UUCUGAACUCUCUCCCUCAU 20 0 0 0 0    0 0 0 0 0
mes-miR1446b UGAACUCUCCCCCUCAACGGCU 22 5,022 1,004 4,491 47    143 249 4,491 47 92
mes-miR156a UGACAGAAGAGAGUGAGCAC 20 6,681 1,336 4,162 169    1,479 4,162 169 437 434
mes-miR156b UGACAGAAGAGAGUGAGCAC 20 6,681 1,336 4,162 169    1,479 4,162 169 437 434
mes-miR156c UGACAGAAGAGAGUGAGCAC 20 6,681 1,336 4,162 169    1,479 4,162 169 437 434
mes-miR156d UGACAGAAGAGAGUGAGCAC 20 6,681 1,336 4,162 169    1,479 4,162 169 437 434
mes-miR156e UGACAGAAGAGAGUGAGCAC 20 6,681 1,336 4,162 169    1,479 4,162 169 437 434
mes-miR156f UGACAGAAGAGAGUGAGCAC 20 6,681 1,336 4,162 169    1,479 4,162 169 437 434
mes-miR156g UGACAGAAGAGAGUGAGCAC 20 6,681 1,336 4,162 169    1,479 4,162 169 437 434
mes-miR156h UUGACAGAAGAUAGAGAGCAC 21 255,174 51,035 137,790 1,790    137,790 65,635 1,790 33,808 16,151
mes-miR156i UUGACAGAAGAUAGAGAGCAC 21 255,174 51,035 137,790 1,790    137,790 65,635 1,790 33,808 16,151
mes-miR156j UUGACAGAAGAUAGAGAGCAC 21 255,174 51,035 137,790 1,790    137,790 65,635 1,790 33,808 16,151
mes-miR156k UUGACAGAAGAGAGAGAGCAC 21 22,383 4,477 13,033 8    57 93 8 13,033 9,192
mes-miR159a-3p UUUGGAUUGAAGGGAGCUCUA 21 889,276 177,855 423,106 37,074    212,756 423,106 61,906 154,434 37,074
mes-miR159a-5p AGCUGCUGAGCUAUGGAUCCC 21 29,068 5,814 12,548 1,375    1,375 4,354 1,603 9,188 12,548
mes-miR159b UUUGGAUUGAAGGGAGCUCUA 21 889,276 177,855 423,106 37,074    212,756 423,106 61,906 154,434 37,074
mes-miR159c AUUGGAGUGAAGGGAGCUCUG 21 1 0 1 1    1 0 0 0 0
mes-miR159d AUUGGAGUGAAGGGAGCUCUG 21 1 0 1 1    1 0 0 0 0
mes-miR160a UGCCUGGCUCCCUGUAUGCCA 21 4,265 853 1,763 149    1,281 1,763 607 465 149
mes-miR160b UGCCUGGCUCCCUGUAUGCCA 21 4,265 853 1,763 149    1,281 1,763 607 465 149
mes-miR160c UGCCUGGCUCCCUGUAUGCCG 21 17 3 7 3    7 4 0 3 3
mes-miR160d UGCCUGGCUCCCUGUAUGCCA 21 4,265 853 1,763 149    1,281 1,763 607 465 149
mes-miR160e UGCCUGGCUCCCUGAAUGCCAUC 23 0 0 0 0    0 0 0 0 0
mes-miR160f UGCCUGGCUCCCUGAAUGCCA 21 883 177 696 36    36 696 40 62 49
mes-miR160g UGCCUGGCUCCCUGUAUGCCAUC 23 1 0 1 1    1 0 0 0 0
mes-miR160h UGCCUGGCUCCCUGUAUGCCAUU 23 4 1 1 1    1 1 1 1 0
mes-miR162 UCGAUAAACCUCUGCAUCCAG 21 10,918 2,184 5,766 705    2,184 1,289 705 5,766 974
mes-miR164a UGGAGAAGCAGGGCACGUGCA 21 710 142 263 7    129 263 7 210 101
mes-miR164b UGGAGAAGCAGGGCACGUGCA 21 710 142 263 7    129 263 7 210 101
mes-miR164c UGGAGAAGCAGGGCACGUGCA 21 710 142 263 7    129 263 7 210 101
mes-miR164d UGGAGAAGCAGGGCACAUGCU 21 5 1 3 2    0 0 3 2 0
mes-miR166a UCGGACCAGGCUUCAUUCCCC 21 12,738,872 2,547,774 4,614,815 341,939    1,787,215 3,822,900 341,939 2,172,003 4,614,815
mes-miR166b UCGGACCAGGCUUCAUUCCCC 21 12,738,872 2,547,774 4,614,815 341,939    1,787,215 3,822,900 341,939 2,172,003 4,614,815
mes-miR166c UCGGACCAGGCUUCAUUCCCC 21 12,738,872 2,547,774 4,614,815 341,939    1,787,215 3,822,900 341,939 2,172,003 4,614,815
mes-miR166d UCGGACCAGGCUUCAUUCCCC 21 12,738,872 2,547,774 4,614,815 341,939    1,787,215 3,822,900 341,939 2,172,003 4,614,815
mes-miR166e UCGGACCAGGCUUCAUUCCCC 21 12,738,872 2,547,774 4,614,815 341,939    1,787,215 3,822,900 341,939 2,172,003 4,614,815
mes-miR166f UCGGACCAGGCUUCAUUCCCC 21 12,738,872 2,547,774 4,614,815 341,939    1,787,215 3,822,900 341,939 2,172,003 4,614,815
mes-miR166g UCGGACCAGGCUUCAUUCCCC 21 12,738,872 2,547,774 4,614,815 341,939    1,787,215 3,822,900 341,939 2,172,003 4,614,815
mes-miR166h UCGGACCAGGCUUCAUUCCCGU 22 2,952 590 1,133 97    187 1,133 97 703 832
mes-miR166i UUGGACCAGGCUUCAUUCCCC 21 4,762 952 1,722 115    605 1,286 115 1,034 1,722
mes-miR166j UCGGACCAGGCUUCAUUCC 19 139,123 27,825 50,196 4,910    10,643 50,196 4,910 23,213 50,161
mes-miR167a UGAAGCUGCCAGCAUGAUCUG 21 39,136 7,827 21,662 739    739 21,662 1,107 7,701 7,927
mes-miR167b UGAAGCUGCCAGCAUGAUCU 20 2,187 437 835 21    21 835 31 621 679
mes-miR167c UGAAGCUGCCAGCAUGAUCUA 21 1,057 211 886 14    68 886 64 25 14
mes-miR167d UGAAGCUGCCAGCAUGAUCUGA 22 10,373 2,075 5,324 186    186 5,324 499 2,341 2,023
mes-miR167e UGAAGCUGCCAGCAUGAUCUGA 22 10,373 2,075 5,324 186    186 5,324 499 2,341 2,023
mes-miR167f UGAAGCUGCCAGCAUGAUCUGA 22 10,373 2,075 5,324 186    186 5,324 499 2,341 2,023
mes-miR167g UGAAGCUGCCAGCAUGAUCUU 21 11,106 2,221 5,229 27    27 5,229 67 3,820 1,963
mes-miR167h UGAAGCUGCCAGCAUGAUCUU 21 11,106 2,221 5,229 27    27 5,229 67 3,820 1,963
mes-miR168a UCGCUUGGUGCAGGUCGGGAA 21 15,192 3,038 5,829 1,567    1,567 1,952 1,647 5,829 4,197
mes-miR169a CAGCCAAGGAUGACUUGCCGG 21 223 45 146 3    146 42 3 19 13
mes-miR169aa UAGCCAAGGAUGACUUGCCUG 21 228 46 139 10    68 139 0 11 10
mes-miR169ab UAGCCAAGGAUGACUUGCCUA 21 42 8 35 2    35 5 0 0 2
mes-miR169ac UAGCCAAGGAUGACUUGCCU 20 465 93 275 1    275 147 1 14 28
mes-miR169ad UCACAGGCUCUUAUUUUUCAUG 22 586 117 391 1    194 391 0 1 0
mes-miR169b CAGCCAAGGAUGACUUGCCGG 21 223 45 146 3    146 42 3 19 13
mes-miR169c CAGCCAAGGAUGACUUGCCGG 21 223 45 146 3    146 42 3 19 13
mes-miR169d CAGCCAAGGAUGACUUGCCGG 21 223 45 146 3    146 42 3 19 13
mes-miR169e CAGCCAAGGAUGACUUGCCGG 21 223 45 146 3    146 42 3 19 13
mes-miR169f UAGCCAAGGAUGACUUGCCGG 21 268 54 205 1    0 1 0 205 62
mes-miR169g CAGCCAAGGAUGACUUGCCGA 21 3 1 1 1    0 1 1 0 1
mes-miR169h UGAGCCAAGGAUGACUUGCCG 21 3 1 3 3    0 3 0 0 0
mes-miR169i GAGCCAAGAAUGACUUGCCGG 21 0 0 0 0    0 0 0 0 0
mes-miR169j GAGCCAAGAAUGACUUGCCGG 21 0 0 0 0    0 0 0 0 0
mes-miR169k GAGCCAAGAAUGACUUGCCGG 21 0 0 0 0    0 0 0 0 0
mes-miR169l CAGCCAAGAAUGACUUGCCGG 21 2 0 1 1    1 1 0 0 0
mes-miR169m CAGCCAAGAAUGACUUGCCGG 21 2 0 1 1    1 1 0 0 0
mes-miR169n GAGCCAAGAAUGACUUGCCGA 21 0 0 0 0    0 0 0 0 0
mes-miR169o UAGCCAAGGAUGACUUGCCUG 21 228 46 139 10    68 139 0 11 10
mes-miR169p UAGCCAAGGAUGACUUGCCUG 21 228 46 139 10    68 139 0 11 10
mes-miR169q UAGCCAAGGAUGACUUGCCUG 21 228 46 139 10    68 139 0 11 10
mes-miR169r UAGCCAAGGAUGACUUGCCCG 21 353 71 257 1    94 257 1 0 1
mes-miR169s UAGCCAAGGAUGACUUGCCUG 21 228 46 139 10    68 139 0 11 10
mes-miR169t UAGCCAAGGAUGACUUGCCCG 21 353 71 257 1    94 257 1 0 1
mes-miR169u UAGCCAAGGAUGACUUGCCUG 21 228 46 139 10    68 139 0 11 10
mes-miR169v UAGCCAAGGAUGACUUGCCCG 21 353 71 257 1    94 257 1 0 1
mes-miR169w UAGCCAAGGAUGACUUGCCUG 21 228 46 139 10    68 139 0 11 10
mes-miR169x UAGCCAAGGAUGACUUGCCCG 21 353 71 257 1    94 257 1 0 1
mes-miR169y UAGCCAAGGAUGACUUGCCUG 21 228 46 139 10    68 139 0 11 10
mes-miR169z UAGCCAAGGAUGACUUGCCCG 21 353 71 257 1    94 257 1 0 1
mes-miR171a UUGAGCCGCGUCAAUAUCUCC 21 2,656 531 1,216 98    472 375 98 1,216 495
mes-miR171b UUGAGCCGUGCCAAUAUCACG 21 479 96 343 6    7 22 6 343 101
mes-miR171c UUGAGCCGUGCCAAUAUCACG 21 479 96 343 6    7 22 6 343 101
mes-miR171d AUGAGCCGUGCCAAUAUCACG 21 2 0 1 1    0 0 0 1 1
mes-miR171e UUGAGCCGCGCCAAUAUCACU 21 2,252 450 1,593 9    491 76 1,593 83 9
mes-miR171f AGAUUGAGCCGCGCCAAUAUC 21 0 0 0 0    0 0 0 0 0
mes-miR171g UGAUUGAGCCGUGCCAAUAUC 21 4,618 924 2,784 284    450 346 754 2,784 284
mes-miR171h UGAUUGAGCCGUGCCAAUAUC 21 4,618 924 2,784 284    450 346 754 2,784 284
mes-miR171i UGAUUGAGCCGUGCCAAUAUC 21 4,618 924 2,784 284    450 346 754 2,784 284
mes-miR171j UGAUUGAGCCGUGCCAAUAUC 21 4,618 924 2,784 284    450 346 754 2,784 284
mes-miR171k UGAUUGAGCCGUGCCAAUAUC 21 4,618 924 2,784 284    450 346 754 2,784 284
mes-miR171l CGAGCCGAACCAAUAUCACUC 21 1,854 371 1,631 22    133 22 1,631 40 28
mes-miR172a AGAAUCUUGAUGAUGCUGCAU 21 391 78 203 14    39 39 14 203 96
mes-miR172b AGAAUCUUGAUGAUGCUGCAU 21 391 78 203 14    39 39 14 203 96
mes-miR172c UGAAUCUUGAUGAUGCUACGC 21 0 0 0 0    0 0 0 0 0
mes-miR172d AGAAUCUUGAUGAUGCUGCAU 21 391 78 203 14    39 39 14 203 96
mes-miR172e GGAAUCUUGAUGAUGCUGCAG 21 767 153 413 10    115 0 10 413 229
mes-miR172f GGAAUCUUGAUGAUGCUGCAG 21 767 153 413 10    115 0 10 413 229
mes-miR2111a UAAUCUGCAUCCUGAGGUUUA 21 133 27 48 1    48 4 1 38 42
mes-miR2111b UAAUCUGCAUCCUGAGGUUUA 21 133 27 48 1    48 4 1 38 42
mes-miR2118 GUUCCCAUGCCACCCAUUUCUA 22 1,443 289 747 4    4 0 747 311 381
mes-miR2275 UUUGGUUUCCUCCAAUAUCUUA 22 0 0 0 0    0 0 0 0 0
mes-miR2950 UUCCAUCUCUUGCACACUGGA 21 1,473 295 1,236 9    1,236 30 9 142 56
mes-miR319a UUGGACUGAAGGGAGCUCCCU 21 76,708 15,342 49,494 1,343    49,494 1,343 10,116 7,883 7,872
mes-miR319b UUGGACUGAAGGGAGCUCCCU 21 76,708 15,342 49,494 1,343    49,494 1,343 10,116 7,883 7,872
mes-miR319c UUGGACUGAAGGGAGCUCCCU 21 76,708 15,342 49,494 1,343    49,494 1,343 10,116 7,883 7,872
mes-miR319d UUGGACUGAAGGGAGCUCCCU 21 76,708 15,342 49,494 1,343    49,494 1,343 10,116 7,883 7,872
mes-miR319e UUGGACUGAAGGGAGCUCCCU 21 76,708 15,342 49,494 1,343    49,494 1,343 10,116 7,883 7,872
mes-miR319f AUUGGACUGAAGGGAGCUCC 20 935 187 629 1    18 2 1 285 629
mes-miR319g UUGGACUGAAGGGAGCUCCUU 21 146 29 82 6    82 23 6 25 10
mes-miR319h CUUGGACUGAAGGGAGCUCCU 21 208 42 67 8    22 53 8 67 58
mes-miR3627 UUGUCGCAGGAGCGGUGGCACC 22 83,898 16,780 43,406 130    130 17,457 6,199 43,406 16,706
mes-miR390 CGCUAUCCAUCCUGAGUUUC 20 170 34 85 1    1 2 45 37 85
mes-miR390b AAGCUCAGGAGGGAUAGCGCC 21 8,945 1,789 3,892 60    75 60 3,892 2,519 2,399
mes-miR393a UCCAAAGGGAUCGCAUUGAUC 21 5,188 1,038 3,608 163    163 255 237 3,608 925
mes-miR393b UCCAAAGGGAUCGCAUUGAUCC 22 767 153 308 19    52 308 133 255 19
mes-miR393c UCCAAAGGGAUCGCAUUGAUCU 22 130,821 26,164 106,910 984    9,292 1,874 984 106,910 11,761
mes-miR393d UCCAAAGGGAUCGCAUUGAUCU 22 130,821 26,164 106,910 984    9,292 1,874 984 106,910 11,761
mes-miR394a UUGGCAUUCUGUCCACCUCC 20 11,329 2,266 5,373 276    2,688 1,617 276 5,373 1,375
mes-miR394b UUGGCAUUCUGUCCACCUCC 20 11,329 2,266 5,373 276    2,688 1,617 276 5,373 1,375
mes-miR394c UUGGCAUUCUGUCCACCUCCAU 22 2 0 1 1    1 0 0 1 0
mes-miR395a CUGAAGUGUUUGGGGGAACUC 21 23,394 4,679 16,747 45    176 16,747 45 4,525 1,901
mes-miR395b CUGAAGUGUUUGGGGGAACUC 21 23,394 4,679 16,747 45    176 16,747 45 4,525 1,901
mes-miR395c CUGAAGUGUUUGGGGGAACUC 21 23,394 4,679 16,747 45    176 16,747 45 4,525 1,901
mes-miR395d CUGAAGUGUUUGGGGGAACUC 21 23,394 4,679 16,747 45    176 16,747 45 4,525 1,901
mes-miR395e CUGAAGGGUUUGGAGGAACUC 21 544 109 359 1    4 153 1 359 27
mes-miR396a UUCCACAGCUUUCUUGAACUG 21 101,117 20,223 77,890 419    77,890 7,979 11,836 2,993 419
mes-miR396b UUCCACAGCUUUCUUGAACUG 21 101,117 20,223 77,890 419    77,890 7,979 11,836 2,993 419
mes-miR396c UUCCACAGCUUUCUUGAACUU 21 93,318 18,664 60,490 1,717    60,490 11,230 1,717 14,510 5,371
mes-miR396d UUCCACAGCUUUCUUGAACUU 21 93,318 18,664 60,490 1,717    60,490 11,230 1,717 14,510 5,371
mes-miR396e UUCCACAGCUUUCUUGAACUU 21 93,318 18,664 60,490 1,717    60,490 11,230 1,717 14,510 5,371
mes-miR396f UUCCACAGCUUUCUUGAACUU 21 93,318 18,664 60,490 1,717    60,490 11,230 1,717 14,510 5,371
mes-miR397 UUUGAGUGCAGCGUUGAUGA 20 0 0 0 0    0 0 0 0 0
mes-miR397b UCAUUGAGUGCAGCGUUGAUG 21 4,455 891 3,122 177    733 177 3,122 210 213
mes-miR398 UGUGUUCUCAGGUCGCCCCUG 21 76,630 15,326 47,642 1,014    4,157 47,642 21,171 2,646 1,014
mes-miR399a UGCCAAAGGAGAAUUGCCCUG 21 1,882 376 960 1    593 960 1 217 111
mes-miR399b UGCCAAAGGAGAUUUGCCCGG 21 317 63 128 30    45 128 0 114 30
mes-miR399c UGCCAAAGGAGAUUUGCCCGG 21 317 63 128 30    45 128 0 114 30
mes-miR399d UGCCAAAGGAGAUUUGCCCGG 21 317 63 128 30    45 128 0 114 30
mes-miR399e UGCCAAAGGAGAUUUGCUCGG 21 1 0 1 1    1 0 0 0 0
mes-miR399f UGCCAAAGGAGAGUUGCCCUG 21 1,509 302 808 2    205 808 2 337 157
mes-miR399g UGCCAAAGGAGAUUUGCCCGG 21 317 63 128 30    45 128 0 114 30
mes-miR399h GGGCACCUCUCGCUUGGCAGG 21 395 79 179 1    60 179 1 53 102
mes-miR403a UUAGAUUCACGCACAAACUCG 21 37,762 7,552 13,046 1,038    7,912 13,046 8,485 7,281 1,038
mes-miR403b UUAGAUUCACGCACAAACUCG 21 37,762 7,552 13,046 1,038    7,912 13,046 8,485 7,281 1,038
mes-miR408 AUGCACUGCCUCUUCCCUGGC 21 7,920 1,584 3,057 526    748 2,836 3,057 753 526
mes-miR477a CUCUCCCUCAAGGGCUUCUG 20 29 6 21 1    21 1 0 4 3
mes-miR477b CUCUCCCUCAAGGGCUUCUG 20 29 6 21 1    21 1 0 4 3
mes-miR477c CUCUCCCUCAAGGGCUUCUG 20 29 6 21 1    21 1 0 4 3
mes-miR477d CUCUCCCUCAAGGGCUUCUC 20 3 1 2 1    2 0 0 0 1
mes-miR477e CUCUCCCUCAAGGGCUUCUG 20 29 6 21 1    21 1 0 4 3
mes-miR477f AUCUCCCUCAAAGGCUUCCA 20 0 0 0 0    0 0 0 0 0
mes-miR477g AUCUCCCUCAAAGGCUUCCA 20 0 0 0 0    0 0 0 0 0
mes-miR477h ACUCUCCCUCAAGGGCUUCAG 21 679 136 308 1    308 70 1 128 172
mes-miR477i ACUCUCCCUCAAGGGCUUCCG 21 11 2 4 1    2 1 0 4 4
mes-miR477j ACUCUCCCUAAAGGCUUCAAC 21 32,998 6,600 16,992 18    16,992 10,477 18 1,823 3,688
mes-miR477k ACUCUCCCUCAAGAGCUUCUC 21 1,155 231 392 1    392 230 1 213 319
mes-miR482 UCUUCCCUACUCCACCCAUUCC 22 166 33 78 6    78 66 6 7 9
mes-miR482b UUCCCAAUGUCGCCCAUUCCGA 22 123,159 24,632 45,699 10,031    34,880 11,732 45,699 10,031 20,817
mes-miR482c UUUUCCCAAGACCUCCCAUACC 22 78,356 15,671 20,157 5,369    14,942 19,227 5,369 20,157 18,661
mes-miR482d UUCCCGACACCACCCAUUCCAU 22 63,034 12,607 31,874 5,962    8,837 31,874 10,068 5,962 6,293
mes-miR482e UCUUACCUACACCGCCCAUGCC 22 141,313 28,263 53,388 12,270    21,276 53,388 37,559 16,820 12,270
mes-miR530a UGCAUUUGCACCUGCACCUU 20 60 12 25 11    12 11 0 25 12
mes-miR530b UGCAUUUGCACCUGCACCUUA 21 828 166 489 5    174 98 5 489 62
mes-miR535a UGACAACGAGAGAGAGCACGU 21 35,315 7,063 12,608 1,578    8,093 12,608 1,578 7,275 5,761
mes-miR535b UGACAACGAGAGAGAGCACGG 21 4,293 859 2,977 229    542 2,977 312 229 233
mes-miR535c UUGACGACGAGAGAGAGCACA 21 29,985 5,997 15,644 721    6,341 15,644 721 4,628 2,651
mes-miR535d UUGACGACGAGAGAGAGCACG 21 44,468 8,894 27,521 1,762    9,657 27,521 2,842 2,686 1,762
mes-miR6445 UUCAUUCCUCUUCCUAAAAUGG 22 42,015 8,403 14,910 1,443    8,743 9,998 14,910 6,921 1,443
mes-miR827 UUAGAUGACCAUCAACAAACA 21 5,270 1,054 3,068 169    169 669 399 3,068 965
mes-miR828a UCUUGCUCAAAUGAGUAUUCCA 22 2 0 2 2    2 0 0 0 0
mes-miR828b UCUUGCUCAAAUGAGUAUUCCA 22 2 0 2 2    2 0 0 0 0
mes-miR9386 UUUGCAGUUCGAAAGUGGAAGC 22 640,035 128,007 315,289 5,748    315,289 146,661 100,523 71,814 5,748