Tomato small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
SLY1 Solanum lycopersicum (tomato), leavesSBSsRNA4,763,7013,429,1131,101,658750,2735M3318GSM803579
SLY2 Solanum lycopersicum (tomato), pre-anthesis flowersSBSsRNA5,063,6593,361,5401,539,482928,9845M3318GSM803580
SLY3 Solanum lycopersicum (tomato), breaker-stage fruitSBSsRNA5,044,3783,416,3431,646,387943,0335M3318GSM803581
sly_1 Solanum lycopersicum, tetrad, rep1SBSsRNA4,962,9144,061,7722,592,897276,7575M3418SAMEA3506746
sly_2 Solanum lycopersicum, tetrad, rep2SBSsRNA5,871,9284,934,2572,959,332263,5505M3418SAMEA3506747
sly_3 Solanum lycopersicum, tetrad, rep3SBSsRNA6,553,6255,654,2953,468,023236,2535M3418SAMEA3506748
sly_4 Solanum lycopersicum, tetrad, heat stress, rep1SBSsRNA3,784,0543,141,7522,110,753215,3365M3418SAMEA3506755
sly_5 Solanum lycopersicum,tetrad,heat stress, rep2SBSsRNA4,159,0113,561,0082,197,640175,5465M3418SAMEA3506756
sly_6 Solanum lycopersicum,tetrad,heat stress, rep3SBSsRNA4,123,1713,536,5842,173,900168,0505M3418SAMEA3506757
sly_7 Solanum lycopersicum,post-meiotic, rep1SBSsRNA5,022,3523,939,5053,047,642432,3865M3418SAMEA3506743
sly_8 Solanum lycopersicum,post-meiotic, rep2SBSsRNA4,648,1573,676,8462,894,985409,4595M3418SAMEA3506744
sly_9 Solanum lycopersicum,post-meiotic, rep3SBSsRNA4,369,0963,624,2452,639,151277,2345M3418SAMEA3506745
sly_10 Solanum lycopersicum,post-meiotic, heat stress, rep1SBSsRNA2,687,7901,860,0611,531,354338,7675M3418SAMEA3506752
sly_11 Solanum lycopersicum,post-meiotic, heat stress, rep2SBSsRNA2,356,4961,745,6811,445,942276,9195M3418SAMEA3506753
sly_12 Solanum lycopersicum,post-meiotic, heat stress, rep3SBSsRNA4,084,2383,143,7292,252,198415,8915M3418SAMEA3506754
sly_13 Solanum lycopersicum,mature pollen, rep1SBSsRNA3,863,9442,944,4961,593,129439,6985M3418SAMEA3506740
sly_14 Solanum lycopersicum,mature pollen, rep2SBSsRNA2,593,3992,004,6661,017,493297,2045M3418SAMEA3506741
sly_15 Solanum lycopersicum,mature pollen, rep3SBSsRNA2,743,8902,191,7271,166,627258,8505M3418SAMEA3506742
sly_16 Solanum lycopersicum,mature pollen, heat stress, rep1SBSsRNA1,762,7561,242,942672,128338,9885M3418SAMEA3506749
sly_17 Solanum lycopersicum,mature pollen, heat stress, rep2SBSsRNA2,398,6591,776,666889,332399,8505M3418SAMEA3506750
sly_18 Solanum lycopersicum,mature pollen, heat stress, rep3SBSsRNA4,286,4773,571,5351,940,896311,4605M3418SAMEA3506751



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".