tauschii_sRNA Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
AeT_En1	Aegilops tauschii endosperm	SBS	sRNA	16,475,487	4,644,532	896,389	7,232,013	2M	34	18	SRR5460513
AeT_En2	Aegilops tauschii endosperm2	SBS	sRNA	15,855,314	3,981,755	765,277	6,564,724	2M	34	18	SRR5460512
AeT_En3	Aegilops tauschii endosperm3	SBS	sRNA	13,725,238	3,990,127	856,583	7,010,589	2M	34	18	SRR5460509
TrU_En1	Triticum urartu endosperm1	SBS	sRNA	36,109,154	6,439,010	979,743	18,210,074	2M	34	18	SRR5460508
TrU_En2	Triticum urartu endosperm2	SBS	sRNA	43,548,584	7,351,522	1,307,669	23,083,558	2M	34	18	SRR5460507
TrU_En3	Triticum urartu endosperm3	SBS	sRNA	19,662,232	3,508,374	525,516	10,283,980	2M	34	18	SRR5460481
TT_En1	Triticum turgidum endosperm1	SBS	sRNA	27,181,320	3,224,383	564,598	11,592,472	2M	34	18	SRR5460528
TT_En2	Triticum turgidum endosperm2	SBS	sRNA	22,841,623	3,511,747	715,673	11,807,881	2M	34	18	SRR5460526
TT_En3	Triticum turgidum endosperm3	SBS	sRNA	41,021,356	5,621,433	896,300	21,152,605	2M	34	18	SRR5460524
AeL_En1	Aegilops longissima endosperm1	SBS	sRNA	27,136,710	4,535,333	947,596	13,821,928	2M	34	18	SRR5460523
AeL_En2	Aegilops longissima endosperm2	SBS	sRNA	20,501,933	4,068,498	624,952	9,695,243	2M	34	18	SRR5460522
AeL_En3	Aegilops longissima endosperm3	SBS	sRNA	27,270,475	4,468,077	799,775	16,041,775	2M	34	18	SRR5460521
TT_En4	Triticum turgidum endosperm4	SBS	sRNA	21,550,148	7,156,759	1,478,399	7,306,413	2M	34	18	SRR5460517
TT_En5	Triticum turgidum endosperm5	SBS	sRNA	26,224,655	6,317,500	1,453,092	12,849,077	2M	34	18	SRR5460516
TT_En6	Triticum turgidum endosperm6	SBS	sRNA	16,563,406	4,113,401	1,313,648	8,091,429	2M	34	18	SRR5460515
TrU_En4	Triticum urartu endosperm4	SBS	sRNA	8,053,734	899,957	296,915	5,221,781	2M	34	18	SRR5460518
TrU_En5	Triticum urartu endosperm5	SBS	sRNA	17,743,947	2,987,816	707,866	10,428,984	2M	34	18	SRR5460519
TrU_En6	Triticum urartu endosperm6	SBS	sRNA	21,986,644	3,380,631	878,177	12,178,021	2M	34	18	SRR5460520
TrA_Sdl	Triticum aestivum 5-leaf-stage seedlings	SBS	sRNA	1,189,266	115,370	28,433	114,956	2M	34	18	SRR975066
TrA_20d_Seed	Triticum aestivum immature seeds at 20 days	SBS	sRNA	596,866	45,198	29,575	41,115	2M	34	18	SRR974915
TrA_10d_Seed	Triticum aestivum immature seeds at 10 days	SBS	sRNA	941,041	184	132	822	2M	34	18	SRR974914
TrA_5d_Seed	Triticum aestivum immature seeds at 5 days	SBS	sRNA	520,940	36,718	19,429	21,992	2M	34	18	SRR974913
TrA_flag_leaf	Triticum aestivum flag leaves of heading plants	SBS	sRNA	947,555	115,703	15,663	15,671	2M	34	18	SRR974912
TrA_11d_sd_nat	Triticum aestivum 11 day-post flower seed, natural wheat	SBS	sRNA	2,094,508	130,839	19,628	757,357	2M	34	18	SRR1222461
TrA_spk_nat_2	Triticum aestivum spike at heading, natural wheat	SBS	sRNA	345,507	4,678	3,897	5,488	2M	34	18	SRR1222462
TrA_spk_nat_1	Triticum aestivum spike at heading, natural wheat	SBS	sRNA	294,320	5,152	4,320	6,851	2M	34	18	SRR1222463
TrA_spk_S4	Triticum aestivum spike at heading, S4	SBS	sRNA	103,768	2,025	1,883	1,785	2M	34	18	SRR1222464
TrA_11d_sd_S3_2	Triticum aestivum 11 day-post flower seed, S3	SBS	sRNA	531,494	53,435	4,340	140,676	2M	34	18	SRR1222465
TrA_11d_sd_S3_1	Triticum aestivum 11 day-post flower seed, S3	SBS	sRNA	340,637	4,934	3,645	1,904	2M	34	18	SRR1222466
TrA_spk_S3_2	Triticum aestivum spike at heading, S3	SBS	sRNA	610,255	54,072	21,015	181,106	2M	34	18	SRR1222467
TrA_spk_S3_1	Triticum aestivum spike at heading, S3	SBS	sRNA	341,636	9,301	8,230	7,793	2M	34	18	SRR1222468
TrA_7d_sdl_S3_2	Triticum aestivum 7 day seedling, S3	SBS	sRNA	285,509	13,790	10,936	5,172	2M	34	18	SRR1222469
TrA_7d_sdl_S3_1	Triticum aestivum 7 day seedling, S3	SBS	sRNA	84,406	3,754	3,404	1,044	2M	34	18	SRR1222470
TrA_11d_sd_S2	Triticum aestivum 11 day-post flower seed, S2	SBS	sRNA	463,714	48,351	6,396	127,609	2M	34	18	SRR1222471
TrA_spk_S1	Triticum aestivum spike at heading, S1	SBS	sRNA	321,672	15,685	9,439	1,911	2M	34	18	SRR1222472
TrA_11d_sd_S1	Triticum aestivum 11 day-post flower seed, S1	SBS	sRNA	602,433	37,033	6,945	194,602	2M	34	18	SRR1222473
AeT_11d_sd_p_2	Aegilops tauschii 11 day-post flower seed, paternal	SBS	sRNA	250,563	8,304	6,560	1,808	2M	34	18	SRR1222474
AeT_11d_sd_p_1	Aegilops tauschii 11 day-post flower seed, paternal	SBS	sRNA	300,139	10,998	5,303	20,597	2M	34	18	SRR1222475
AeT_spk_p_2	Aegilops tauschii spike at heading, paternal	SBS	sRNA	1,221,141	75,903	13,197	486,365	2M	34	18	SRR1222476
AeT_spk_p_1	Aegilops tauschii spike at heading, paternal	SBS	sRNA	219,614	1,543	1,401	1,582	2M	34	18	SRR1222477
AeT_7d_sdl_p_2	Aegilops tauschii 7 day seedling, paternal	SBS	sRNA	284,747	11,045	8,421	3,779	2M	34	18	SRR1222478
AeT_7d_sdl_p_1	Aegilops tauschii 7 day seedling, paternal	SBS	sRNA	77,460	2,647	2,439	414	2M	34	18	SRR1222479
TT_11d_sd_m_2	Triticum turgidum 11 day-post flower seed, maternal	SBS	sRNA	2,552,250	465,688	12,524	1,385,167	2M	34	18	SRR1222480
TT_11d_sd_m_1	Triticum turgidum 11 day-post flower seed, maternal	SBS	sRNA	348,575	10,379	7,468	1,538	2M	34	18	SRR1222481
TT_spk_m_2	Triticum turgidum spike at heading, maternal	SBS	sRNA	301,484	9,172	7,627	2,207	2M	34	18	SRR1222482
TT_spk_m_1	Triticum turgidum spike at heading, maternal	SBS	sRNA	281,357	10,883	9,215	772	2M	34	18	SRR1222483
TT_7d_sdl_m_2	Triticum turgidum 7 day seedling, maternal	SBS	sRNA	93,550	3,508	3,292	176	2M	34	18	SRR1222484
TT_7d_sdl_m_1	Triticum turgidum 7 day seedling, maternal	SBS	sRNA	266,399	9,993	7,043	1,100	2M	34	18	SRR1222485

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 100