Ae. tauschii Small RNA Library Information

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Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
AeT_En1 Aegilops tauschii endospermSBS16,475,4874,448,446844,8667,232,0132M3418SRR5460513
AeT_En2 Aegilops tauschii endosperm2SBS15,855,3143,799,801722,0176,564,7242M3418SRR5460512
AeT_En3 Aegilops tauschii endosperm3SBS13,725,2383,735,267800,8557,010,5892M3418SRR5460509
TrU_En1 Triticum urartu endosperm1SBS36,109,1545,575,573868,34918,210,0742M3418SRR5460508
TrU_En2 Triticum urartu endosperm2SBS43,548,5846,261,3241,170,99723,083,5582M3418SRR5460507
TrU_En3 Triticum urartu endosperm3SBS19,662,2323,125,978468,90110,283,9802M3418SRR5460481
TT_En1 Triticum turgidum endosperm1SBS27,181,3202,854,181509,78111,592,4722M3418SRR5460528
TT_En2 Triticum turgidum endosperm2SBS22,841,6233,078,901645,62711,807,8812M3418SRR5460526
TT_En3 Triticum turgidum endosperm3SBS41,021,3565,110,274827,34921,152,6052M3418SRR5460524
AeL_En1 Aegilops longissima endosperm1SBS27,136,7103,963,928858,05713,821,9282M3418SRR5460523
AeL_En2 Aegilops longissima endosperm2SBS20,501,9333,784,533576,2419,695,2432M3418SRR5460522
AeL_En3 Aegilops longissima endosperm3SBS27,270,4754,026,642742,77616,041,7752M3418SRR5460521
TT_En4 Triticum turgidum endosperm4SBS21,550,1486,556,0501,363,5947,306,4132M3418SRR5460517
TT_En5 Triticum turgidum endosperm5SBS26,224,6555,505,7371,330,10312,849,0772M3418SRR5460516
TT_En6 Triticum turgidum endosperm6SBS16,563,4063,561,8751,217,9228,091,4292M3418SRR5460515
TrU_En4 Triticum urartu endosperm4SBS8,053,734667,219261,1755,221,7812M3418SRR5460518
TrU_En5 Triticum urartu endosperm5SBS17,743,9472,595,993642,26410,428,9842M3418SRR5460519
TrU_En6 Triticum urartu endosperm6SBS21,986,6442,767,077776,39512,178,0212M3418SRR5460520
TrA_Sdl Triticum aestivum 5-leaf-stage seedlingsSBS1,189,266112,38525,976114,9562M3418SRR975066
TrA_20d_Seed Triticum aestivum immature seeds at 20 daysSBS596,86641,05026,24141,1152M3418SRR974915
TrA_10d_Seed Triticum aestivum immature seeds at 10 daysSBS941,0411681188222M3418SRR974914
TrA_5d_Seed Triticum aestivum immature seeds at 5 daysSBS520,94035,01818,09521,9922M3418SRR974913
TrA_flag_leaf Triticum aestivum flag leaves of heading plantsSBS947,555113,87414,21715,6712M3418SRR974912
TrA_11d_sd_nat Triticum aestivum 11 day-post flower seed, natural wheatSBS2,094,508128,71618,240757,3572M3418SRR1222461
TrA_spk_nat_2 Triticum aestivum spike at heading, natural wheatSBS345,5074,2263,4645,4882M3418SRR1222462
TrA_spk_nat_1 Triticum aestivum spike at heading, natural wheatSBS294,3204,3673,7876,8512M3418SRR1222463
TrA_spk_S4 Triticum aestivum spike at heading, S4SBS103,7681,7551,6201,7852M3418SRR1222464
TrA_11d_sd_S3_2 Triticum aestivum 11 day-post flower seed, S3SBS531,49452,3683,622140,6762M3418SRR1222465
TrA_11d_sd_S3_1 Triticum aestivum 11 day-post flower seed, S3SBS340,6374,3963,1911,9042M3418SRR1222466
TrA_spk_S3_2 Triticum aestivum spike at heading, S3SBS610,25551,95119,470181,1062M3418SRR1222467
TrA_spk_S3_1 Triticum aestivum spike at heading, S3SBS341,6368,5217,4997,7932M3418SRR1222468
TrA_7d_sdl_S3_2 Triticum aestivum 7 day seedling, S3SBS285,50911,69510,1135,1722M3418SRR1222469
TrA_7d_sdl_S3_1 Triticum aestivum 7 day seedling, S3SBS84,4063,4763,1401,0442M3418SRR1222470
TrA_11d_sd_S2 Triticum aestivum 11 day-post flower seed, S2SBS463,71446,8755,719127,6092M3418SRR1222471
TrA_spk_S1 Triticum aestivum spike at heading, S1SBS321,67214,5798,5851,9112M3418SRR1222472
TrA_11d_sd_S1 Triticum aestivum 11 day-post flower seed, S1SBS602,43335,9066,145194,6022M3418SRR1222473
AeT_11d_sd_p_2 Aegilops tauschii 11 day-post flower seed, paternalSBS250,5636,8026,0031,8082M3418SRR1222474
AeT_11d_sd_p_1 Aegilops tauschii 11 day-post flower seed, paternalSBS300,13910,3634,78820,5972M3418SRR1222475
AeT_spk_p_2 Aegilops tauschii spike at heading, paternalSBS1,221,14174,39512,246486,3652M3418SRR1222476
AeT_spk_p_1 Aegilops tauschii spike at heading, paternalSBS219,6141,3991,2631,5822M3418SRR1222477
AeT_7d_sdl_p_2 Aegilops tauschii 7 day seedling, paternalSBS284,7478,7377,6673,7792M3418SRR1222478
AeT_7d_sdl_p_1 Aegilops tauschii 7 day seedling, paternalSBS77,4602,4412,2364142M3418SRR1222479
TT_11d_sd_m_2 Triticum turgidum 11 day-post flower seed, maternalSBS2,552,250462,09910,2991,385,1672M3418SRR1222480
TT_11d_sd_m_1 Triticum turgidum 11 day-post flower seed, maternalSBS348,5759,5636,8211,5382M3418SRR1222481
TT_spk_m_2 Triticum turgidum spike at heading, maternalSBS301,4847,9386,9402,2072M3418SRR1222482
TT_spk_m_1 Triticum turgidum spike at heading, maternalSBS281,3579,3048,3777722M3418SRR1222483
TT_7d_sdl_m_2 Triticum turgidum 7 day seedling, maternalSBS93,5503,1442,9461762M3418SRR1222484
TT_7d_sdl_m_1 Triticum turgidum 7 day seedling, maternalSBS266,3999,0816,3501,1002M3418SRR1222485



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 100