Ae. tauschii Small RNA Library Information

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Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
AeT_En1 Aegilops tauschii endospermSBS16,475,4874,644,532896,3897,232,0132M3418SRR5460513
AeT_En2 Aegilops tauschii endosperm2SBS15,855,3143,981,755765,2776,564,7242M3418SRR5460512
AeT_En3 Aegilops tauschii endosperm3SBS13,725,2383,990,127856,5837,010,5892M3418SRR5460509
TrU_En1 Triticum urartu endosperm1SBS36,109,1546,439,010979,74318,210,0742M3418SRR5460508
TrU_En2 Triticum urartu endosperm2SBS43,548,5847,351,5221,307,66923,083,5582M3418SRR5460507
TrU_En3 Triticum urartu endosperm3SBS19,662,2323,508,374525,51610,283,9802M3418SRR5460481
TT_En1 Triticum turgidum endosperm1SBS27,181,3203,224,383564,59811,592,4722M3418SRR5460528
TT_En2 Triticum turgidum endosperm2SBS22,841,6233,511,747715,67311,807,8812M3418SRR5460526
TT_En3 Triticum turgidum endosperm3SBS41,021,3565,621,433896,30021,152,6052M3418SRR5460524
AeL_En1 Aegilops longissima endosperm1SBS27,136,7104,535,333947,59613,821,9282M3418SRR5460523
AeL_En2 Aegilops longissima endosperm2SBS20,501,9334,068,498624,9529,695,2432M3418SRR5460522
AeL_En3 Aegilops longissima endosperm3SBS27,270,4754,468,077799,77516,041,7752M3418SRR5460521
TT_En4 Triticum turgidum endosperm4SBS21,550,1487,156,7591,478,3997,306,4132M3418SRR5460517
TT_En5 Triticum turgidum endosperm5SBS26,224,6556,317,5001,453,09212,849,0772M3418SRR5460516
TT_En6 Triticum turgidum endosperm6SBS16,563,4064,113,4011,313,6488,091,4292M3418SRR5460515
TrU_En4 Triticum urartu endosperm4SBS8,053,734899,957296,9155,221,7812M3418SRR5460518
TrU_En5 Triticum urartu endosperm5SBS17,743,9472,987,816707,86610,428,9842M3418SRR5460519
TrU_En6 Triticum urartu endosperm6SBS21,986,6443,380,631878,17712,178,0212M3418SRR5460520
TrA_Sdl Triticum aestivum 5-leaf-stage seedlingsSBS1,189,266115,37028,433114,9562M3418SRR975066
TrA_20d_Seed Triticum aestivum immature seeds at 20 daysSBS596,86645,19829,57541,1152M3418SRR974915
TrA_10d_Seed Triticum aestivum immature seeds at 10 daysSBS941,0411841328222M3418SRR974914
TrA_5d_Seed Triticum aestivum immature seeds at 5 daysSBS520,94036,71819,42921,9922M3418SRR974913
TrA_flag_leaf Triticum aestivum flag leaves of heading plantsSBS947,555115,70315,66315,6712M3418SRR974912
TrA_11d_sd_nat Triticum aestivum 11 day-post flower seed, natural wheatSBS2,094,508130,83919,628757,3572M3418SRR1222461
TrA_spk_nat_2 Triticum aestivum spike at heading, natural wheatSBS345,5074,6783,8975,4882M3418SRR1222462
TrA_spk_nat_1 Triticum aestivum spike at heading, natural wheatSBS294,3205,1524,3206,8512M3418SRR1222463
TrA_spk_S4 Triticum aestivum spike at heading, S4SBS103,7682,0251,8831,7852M3418SRR1222464
TrA_11d_sd_S3_2 Triticum aestivum 11 day-post flower seed, S3SBS531,49453,4354,340140,6762M3418SRR1222465
TrA_11d_sd_S3_1 Triticum aestivum 11 day-post flower seed, S3SBS340,6374,9343,6451,9042M3418SRR1222466
TrA_spk_S3_2 Triticum aestivum spike at heading, S3SBS610,25554,07221,015181,1062M3418SRR1222467
TrA_spk_S3_1 Triticum aestivum spike at heading, S3SBS341,6369,3018,2307,7932M3418SRR1222468
TrA_7d_sdl_S3_2 Triticum aestivum 7 day seedling, S3SBS285,50913,79010,9365,1722M3418SRR1222469
TrA_7d_sdl_S3_1 Triticum aestivum 7 day seedling, S3SBS84,4063,7543,4041,0442M3418SRR1222470
TrA_11d_sd_S2 Triticum aestivum 11 day-post flower seed, S2SBS463,71448,3516,396127,6092M3418SRR1222471
TrA_spk_S1 Triticum aestivum spike at heading, S1SBS321,67215,6859,4391,9112M3418SRR1222472
TrA_11d_sd_S1 Triticum aestivum 11 day-post flower seed, S1SBS602,43337,0336,945194,6022M3418SRR1222473
AeT_11d_sd_p_2 Aegilops tauschii 11 day-post flower seed, paternalSBS250,5638,3046,5601,8082M3418SRR1222474
AeT_11d_sd_p_1 Aegilops tauschii 11 day-post flower seed, paternalSBS300,13910,9985,30320,5972M3418SRR1222475
AeT_spk_p_2 Aegilops tauschii spike at heading, paternalSBS1,221,14175,90313,197486,3652M3418SRR1222476
AeT_spk_p_1 Aegilops tauschii spike at heading, paternalSBS219,6141,5431,4011,5822M3418SRR1222477
AeT_7d_sdl_p_2 Aegilops tauschii 7 day seedling, paternalSBS284,74711,0458,4213,7792M3418SRR1222478
AeT_7d_sdl_p_1 Aegilops tauschii 7 day seedling, paternalSBS77,4602,6472,4394142M3418SRR1222479
TT_11d_sd_m_2 Triticum turgidum 11 day-post flower seed, maternalSBS2,552,250465,68812,5241,385,1672M3418SRR1222480
TT_11d_sd_m_1 Triticum turgidum 11 day-post flower seed, maternalSBS348,57510,3797,4681,5382M3418SRR1222481
TT_spk_m_2 Triticum turgidum spike at heading, maternalSBS301,4849,1727,6272,2072M3418SRR1222482
TT_spk_m_1 Triticum turgidum spike at heading, maternalSBS281,35710,8839,2157722M3418SRR1222483
TT_7d_sdl_m_2 Triticum turgidum 7 day seedling, maternalSBS93,5503,5083,2921762M3418SRR1222484
TT_7d_sdl_m_1 Triticum turgidum 7 day seedling, maternalSBS266,3999,9937,0431,1002M3418SRR1222485



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 100