Soybean Small RNA Library Information

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Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
RImSCs Richland (I/I), immature seed coatsSBS1,270,183909,36320,478175,9972M3318GSM543393
WImSCs Williams (i-i/i-i), immature seed coatsSBS1,427,9451,151,40618,537127,4252M3318GSM543394
WImCOs Williams (i-i), immature cotyledonsSBS1,412,8191,212,44319,97148,8582M3218GSM543395
55ImSCs Williams (mutant 55), immature seed coatsSBS2,429,9801,719,82526,467562,5692M3118GSM543396
emsSCs Early maturation-stage, seed coat parenchyma compartmentSBS5,216,7863,807,500584,35423,7072M2418GSM852280
emsWSs Early-maturation stage, whole seedSBS8,597,4517,022,292817,50716,2422M2418GSM852281
15dAFs Seeds, 15 days after floweringSBS4,811,2013,622,164724,879413,9702M3018GSM621344
RSLIs root, stem, leaf, and inflorescenceSBS2,408,9341,415,273571,093263,2842M2518GSM825573
AntW82_1 Anthers, rep 1SBS39,034,5649,230,4151,728,20725,104,89010M3118GSM1419316
OvaW82_1 Ovaries, rep 1SBS24,714,3557,338,8131,848,34614,087,77010M3118GSM1419318
FlBW82_1 Flower buds, rep 1SBS41,043,0498,486,7111,975,03327,975,33110M3118GSM1419320
OpFlW82_1 Opened flowers, rep 1SBS53,156,35814,621,9611,917,33530,762,42310M3118GSM1419322
WW3023_1 Well-watered soybean leaves (control for drought); line IA3023, rep 1SBS33,467,86517,241,559806,0794,720,47210M3418GSM1419324
WW3023_2 Well-watered soybean leaves (control for drought); line IA3023, rep 2SBS33,230,94815,304,4111,574,7162,833,32310M3418GSM1419325
WW3023_3 Well-watered soybean leaves (control for drought); line IA3023, rep 3SBS35,818,01312,835,592479,8471,841,81910M3418GSM1419326
WW3309_2 Well-watered soybean leaves (control for drought); line LD003309, rep 2SBS32,612,19319,491,9571,779,5543,389,79910M3418GSM1419328
WW3309_3 Well-watered soybean leaves (control for drought); line LD003309, rep 3SBS41,438,42017,785,7391,081,3493,647,49410M3418GSM1419329
WS3023_1 Drought stressed soybean leaves; line IA3023, rep 1SBS24,593,08711,995,654534,3442,908,51810M3418GSM1419330
WS3023_2 Drought stressed soybean leaves; line IA3023, rep 2SBS33,073,68518,518,6551,280,6984,542,63910M3418GSM1419331
WS3023_3 Drought stressed soybean leaves; line IA3023, rep 3SBS36,401,41118,633,5211,720,4585,081,72910M3418GSM1419332
WS3309_1 Drought stressed soybean leaves; line LD003309, rep 1SBS65,225,10432,005,6631,097,5677,305,92710M3418GSM1419333
WS3309_2 Drought stressed soybean leaves; line LD003309, rep 2SBS34,994,66919,252,9801,264,4943,398,66710M3418GSM1419334
WS3309_3 Drought stressed soybean leaves; line LD003309, rep 3SBS38,373,63518,915,8791,536,6105,790,57810M3418GSM1419335
W82CChi_1 Williams 82 leaves (Control of chitin treated: water 30 minutes), rep 1SBS25,881,39813,493,8941,890,7273,955,48210M3418GSM1419336
WW3309_1 Well-watered soybean leaves (control for drought); line LD003309, rep 1SBS40,204,25921,068,597722,1133,697,93610M3418GSM1419327
W82Chi_1 Williams 82 leaves (Chitin treated 30 minutes), rep 1SBS27,516,15315,110,4012,172,1224,992,73010M3418GSM1419338
DasCChi_1 Dassel leaves (Control of chitin treated: water 30 minutes), rep 1SBS23,941,76910,263,0041,387,7085,087,66610M3418GSM1419340
DasChi_1 Dassel leaves (Chitin treated 30 minutes), rep 1SBS22,820,1749,382,3331,405,9794,445,77810M3418GSM1419342
VicCChi_1 Victon leaves (Control of chitin treated: water 30 minutes), rep 1SBS22,081,8469,508,8541,105,2344,374,10110M3418GSM1419344
VicChi_1 Victon leaves (Chitin treated 30 minutes), rep 1SBS24,764,67610,650,8171,403,4744,707,93110M3418GSM1419346
W82CFlag_1 Williams 82 leaves (Control of flagellin treated: water 30 minutes), rep 1SBS28,776,98113,835,0351,819,9375,100,98910M3418GSM1419348
W82Flag_1 Williams 82 leaves (flagellin treated 30 minutes), rep 1SBS25,996,13912,378,2231,614,4994,939,62810M3418GSM1419350
DasCFlag_1 Dassel leaves (Control of flagellin treated: water 30 minutes), rep 1SBS33,153,36312,103,3591,546,0138,474,96610M3418GSM1419352
DasFlag_1 Dassel leaves (flagellin treated 30 minutes), rep 1SBS32,808,21013,242,4891,659,3747,295,77810M3418GSM1419354
VinCFlag_1 Vinton leaves (Control of flagellin treated: water 30 minutes), rep 1SBS28,028,46514,030,7541,677,3095,277,24910M3418GSM1419356
VinFlag_1 Vinton leaves (flagellin treated 30 minutes), rep 1SBS35,783,19119,536,8361,984,3795,642,47610M3418GSM1419358



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".