soy_sRNA Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
GMA01	Glycine max Root	SBS	sRNA	3,124,689	1,485,348	409,106	896,462	1M	34	18	GSM769282
GMA02	Glycine max Nodule	SBS	sRNA	3,313,726	1,691,489	718,713	759,188	1M	34	18	GSM769283
GMA03	Glycine max Flower	SBS	sRNA	2,617,063	1,295,082	682,173	864,641	1M	34	18	GSM769284
GMA04	Glycine max Dev.Seed	SBS	sRNA	3,409,110	1,792,749	819,103	591,892	1M	34	18	GSM769285
GMA05b	Glycine max Williams 82 uninoculated Root Hair, Rep 2	SBS	sRNA	3,697,659	649,982	179,293	1,228,970	1M	34	18	GSM769286
GMA06b	Glycine max inoculated Root Hair, Rep 2	SBS	sRNA	1,900,537	424,800	150,617	634,066	1M	34	18	GSM769287
GMA07b	Glycine max Williams 82 inoculated Stripped Root, Rep2	SBS	sRNA	3,828,884	1,814,945	798,001	747,757	1M	34	18	GSM769288
PVU01	Phaseolus vulgaris Root	SBS	sRNA	3,741,114	347,891	11,887	375,283	500K	34	18	GSM769289
PVU02	Phaseolus vulgaris Flower	SBS	sRNA	3,016,787	292,961	14,275	1,075,278	500K	34	18	GSM769290
PVU03	Phaseolus vulgaris Nodule	SBS	sRNA	2,534,488	253,683	16,348	230,684	500K	34	18	GSM769291
PVU04	Phaseolus vulgaris Dev.Seed	SBS	sRNA	1,579,278	151,196	6,632	164,716	500K	34	18	GSM769292
AHY01	Arachis hypogaea Nodule	SBS	sRNA	3,687,213	108,792	11,406	495,107	500K	34	18	GSM769280
AHY02	Arachis hypogaea Flower	SBS	sRNA	4,265,433	187,792	10,904	252,750	500K	34	18	GSM769281
MSDL1	Medicago truncatula Seeding	SBS	sRNA	3,262,563	932,662	10,718	117,523	500K	33	18	GSM769272
MYR1	Medicago truncatula Root	SBS	sRNA	2,711,830	275,128	7,905	203,665	500K	33	18	GSM769273
MINF	Medicago truncatula Flower	SBS	sRNA	2,609,862	153,665	7,668	64,093	500K	33	18	GSM769274
MND1	Medicago truncatula Nodule	SBS	sRNA	2,272,926	176,098	8,302	244,255	500K	33	18	GSM769275
MRG1	Medicago truncatula Myc	SBS	sRNA	2,511,177	172,898	7,947	494,680	500K	33	18	GSM769276
MLEF	Medicago truncatula Leaf	SBS	sRNA	3,084,454	301,530	7,954	49,167	500K	33	18	GSM769277
MRMI1	Medicago truncatula Root Knot	SBS	sRNA	3,148,639	135,742	10,547	424,105	500K	33	18	GSM769278
MTR01	Medicago truncatula Dev.Seed	SBS	sRNA	2,070,927	92,570	10,893	817,344	500K	34	18	GSM769279
8hpiW82Ps	8hpi Williams 82 infected with P. sojae	SBS	sRNA	8,370,523	2,067,083	722,651	4,941,521	1M	30	18
8hpiHarPs	8hpi Harosoy infected with P, sojae	SBS	sRNA	8,640,374	2,037,919	579,422	5,576,534	1M	30	18
8hW82CT	8hpi Williams 82 control	SBS	sRNA	5,191,824	783,231	235,291	3,497,334	1M	30	18
8hHarCT	8hpi Harosoy control	SBS	sRNA	4,647,701	461,788	94,640	3,467,436	1M	30	18
WT_1	Soybean leaf WT rep1	SBS	sRNA	15,953,001	8,045,727	1,151,119	2,461,840	10M	34	18	GSM1973171
WT_2	Soybean leaf WT rep2	SBS	sRNA	27,492,951	14,781,574	1,995,066	4,520,316	10M	34	18	GSM1973172
dcl1a_1_3	Soybean leaf dcl1a rep1-1	SBS	sRNA	15,955,206	7,146,387	1,142,780	3,193,417	10M	34	18	GSM1973173
dcl1a_1_4	Soybean leaf dcl1a rep1-2	SBS	sRNA	16,415,995	7,698,822	1,271,020	3,163,760	10M	34	18	GSM1973174
dcl1a_2_5	Soybean leaf dcl1a rep2-1	SBS	sRNA	29,182,866	15,354,884	2,112,493	5,558,581	10M	34	18	GSM1973175
dcl1a_2_6	Soybean leaf dcl1a rep2-2	SBS	sRNA	22,309,674	9,938,970	1,542,859	3,822,624	10M	34	18	GSM1973176
dcl1b_1_7	Soybean leaf dcl1b rep1-1	SBS	sRNA	41,256,002	20,653,962	2,313,906	6,464,101	10M	34	18	GSM1973177
dcl1b_1_8	Soybean leaf dcl1b rep1-2	SBS	sRNA	27,574,504	16,247,018	2,475,615	5,056,821	10M	34	18	GSM1973178
dcl1a_dcl1b_9	Soybean leaf dcl1a-ho_dcl1b-ho	SBS	sRNA	25,307,481	12,172,169	1,184,892	4,358,532	10M	34	18	GSM1973179
dcl1a_dcl1b_10	Soybean leaf dcl1a-ho_dcl1b-he	SBS	sRNA	33,673,698	18,848,840	2,497,354	5,237,821	10M	34	18	GSM1973180

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".