Rice Small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
WT2003s WT2003 wildtype leaf library from epigenome study (Stroud et al., 2013)SBS21,950,6169,457,5131,232,8879,207,30810M3418GSM1081563
WT2007s WT2007 wildtype leaf library from epigenome study (Stroud et al., 2013); small RNASBS16,863,9937,713,2851,166,5436,994,50710M3418GSM1081564
WT2011s WT2011 wildtype leaf library from epigenome study (Stroud et al., 2013); small RNASBS14,636,4967,049,1871,230,8885,487,53410M3418GSM1081565
T2iZ11R T2-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS21,747,41410,396,6221,337,6698,294,54310M3418GSM1081566
T2iZ11S T2-PiZt-11-S leaf library from epigenome study (Stroud et al., 2013); non-transgenic segregant; small RNASBS17,446,0308,400,9371,434,2346,299,48510M3418GSM1081567
T4iZ11S T4-PiZt-11-S leaf library from epigenome study (Stroud et al., 2013); non-transgenic segregant; small RNASBS22,020,55111,700,3001,808,5227,393,67610M3418GSM1081569
T4iZ11R T4-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS18,955,4089,282,9981,328,1367,227,67510M3418GSM1081568
T6iZ11R T6-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS12,651,4455,905,042993,1254,825,35510M3418GSM1081570
T6P9R T6-Pi9-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS16,644,0558,194,6261,043,7884,934,88610M3418GSM1081571
T6Sp1R T6-Spin1i-1-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS16,020,3807,087,261813,3446,505,55110M3418GSM1081572
AGO18IP-RSV-1 Rice AGO18IP/RSV Repeat 1SBS2,443,712760,723359,333328,082500K3418SRX847820
AGO18IP/RSV-2 Rice AGO18IP/RSV Repeat 2SBS2,599,104856,828432,366165,984500K3418SRX847821
AGO1bIP-RSV-2 Rice AGO1bIP/RSV Repeat 2SBS10,143,330224,06194,251223,662500K3418SRX847819
AGO1aIP-RSV-1 Rice AGO1aIP/RSV Repeat 1SBS2,350,260574,775270,028237,543500K3418SRX847816
AGO1aIP-RSV-2 Rice AGO1aIP/RSV repeat 2SBS1,718,898354,846167,074106,322500K3418SRX847817
AGO1bIP-RSV-1 Rice AGO1bIP/RSV Repeat 1SBS2,365,588631,843257,147392,921500K3418SRX847818



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".