Rice Small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
WT2003s WT2003 wildtype leaf library from epigenome study (Stroud et al., 2013)SBS21,950,6169,457,5131,232,8879,207,30810M3418GSM1081563
WT2007s WT2007 wildtype leaf library from epigenome study (Stroud et al., 2013); small RNASBS16,863,9937,713,2851,166,5436,994,50710M3418GSM1081564
WT2011s WT2011 wildtype leaf library from epigenome study (Stroud et al., 2013); small RNASBS14,636,4967,049,1871,230,8885,487,53410M3418GSM1081565
T2iZ11R T2-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS21,747,41410,396,6221,337,6698,294,54310M3418GSM1081566
T2iZ11S T2-PiZt-11-S leaf library from epigenome study (Stroud et al., 2013); non-transgenic segregant; small RNASBS17,446,0308,400,9371,434,2346,299,48510M3418GSM1081567
T4iZ11S T4-PiZt-11-S leaf library from epigenome study (Stroud et al., 2013); non-transgenic segregant; small RNASBS22,020,55111,700,3001,808,5227,393,67610M3418GSM1081569
T4iZ11R T4-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS18,955,4089,282,9981,328,1367,227,67510M3418GSM1081568
T6iZ11R T6-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS12,651,4455,905,042993,1254,825,35510M3418GSM1081570
T6P9R T6-Pi9-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS16,644,0558,194,6261,043,7884,934,88610M3418GSM1081571
T6Sp1R T6-Spin1i-1-R leaf library from epigenome study (Stroud et al., 2013); small RNASBS16,020,3807,087,261813,3446,505,55110M3418GSM1081572
AGO18IP-RSV-1 Rice AGO18IP/RSV Repeat 1SBS2,443,712760,723359,333328,082500K3218SRX847820
AGO18IP/RSV-2 Rice AGO18IP/RSV Repeat 2SBS2,599,104856,828432,366165,984500K3218SRX847821
AGO1bIP-RSV-2 Rice AGO1bIP/RSV Repeat 2SBS10,143,330224,06194,251223,662500K3418SRX847819
AGO1aIP-RSV-1 Rice AGO1aIP/RSV Repeat 1SBS2,350,260574,775270,028237,543500K3418SRX847816
AGO1aIP-RSV-2 Rice AGO1aIP/RSV repeat 2SBS1,718,898354,846167,074106,322500K3418SRX847817
AGO1bIP-RSV-1 Rice AGO1bIP/RSV Repeat 1SBS2,365,588631,843257,147392,921500K3418SRX847818
wt_kit_adult Rice WT Kitaake adultSBS35,779,06614,073,0752,685,85517,178,29020M3418GSM3734298
miR2_adult Rice miR2 adult (osa-MIR159b)SBS36,689,21816,100,1822,473,32515,866,42520M3418GSM3734299
miR7b_adult Rice miR7b adult (osa-MIR398a)SBS38,371,75914,123,5842,803,99618,392,68520M3418GSM3734300
miR8_adult Rice miR8 adult (osa-MIR408)SBS42,743,12018,243,9403,132,36119,506,63620M3418GSM3734301
miR390_KO1 Rice mir390 TALEN mutant, rep 1SBS24,705,27916,094,1345,815,3574,352,22320M3418GSM3734302
miR390_KO2 Rice mir390 TALEN mutant, rep 2SBS23,958,82315,368,5475,553,5034,216,61620M3418GSM3734303
wt390r1 Rice, wildtype control for miR390 TALEN mutant, rep 1SBS30,259,36320,814,3307,389,5875,025,05120M3418GSM3734304
wt390r2 Rice, wildtype control for miR390 TALEN mutant, rep 2SBS28,828,46819,795,7997,024,9064,889,19620M3418GSM3734305



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".