Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.
Code | Title | Technology | Library Type | Total Sequences |
Genome Matched Reads* |
Distinct Genome Matched Reads* |
t/r/sn/snoRNA Matched Reads |
Norm. Base Value |
Max. Len. of Reads |
Min. Len. of Reads |
GEO Accession Number |
---|---|---|---|---|---|---|---|---|---|---|---|
RNA_Stu_c5_STS3a | Potato, short day swollen stolons | SBS | sRNA | 2,144,109 | 1,811,055 | 294,331 | 0 | 10M | 34 | 18 | SRR825916 |
RNA_Stu_c5_STS3b | Potato, short day swollen stolons | SBS | sRNA | 992,965 | 836,737 | 172,058 | 0 | 10M | 34 | 18 | SRR825915 |
RNA_Stu_c5_STS2a | Potato, short day swollen stolons | SBS | sRNA | 1,160,504 | 901,453 | 256,951 | 0 | 10M | 34 | 18 | SRR825914 |
RNA_Stu_c5_STS2b | Potato, short day swollen stolons | SBS | sRNA | 1,751,650 | 1,357,947 | 368,242 | 0 | 10M | 34 | 18 | SRR825913 |
RNA_Stu_c5_STS1a | Potato, short day swollen stolons | SBS | sRNA | 2,505,486 | 1,746,796 | 578,394 | 0 | 10M | 34 | 18 | SRR825912 |
RNA_Stu_c5_STS1b | Potato, short day swollen stolons | SBS | sRNA | 1,618,397 | 1,128,373 | 409,378 | 0 | 10M | 34 | 18 | SRR825911 |
RNA_Stu_c5_SS3a | Potato, short day stolons | SBS | sRNA | 3,323,986 | 2,255,107 | 682,583 | 0 | 10M | 34 | 18 | SRR825910 |
RNA_Stu_c5_SS3b | Potato, short day stolons | SBS | sRNA | 641,076 | 431,330 | 185,365 | 0 | 10M | 34 | 18 | SRR825909 |
RNA_Stu_c5_SS2a | Potato, short day stolons | SBS | sRNA | 3,834,447 | 2,562,020 | 724,695 | 0 | 10M | 34 | 18 | SRR825908 |
RNA_Stu_c5_SS2b | Potato, short day stolons | SBS | sRNA | 806,638 | 542,538 | 204,093 | 0 | 10M | 34 | 18 | SRR825907 |
RNA_Stu_c5_SS1a | Potato, short day stolons | SBS | sRNA | 2,261,939 | 1,780,528 | 352,825 | 0 | 10M | 34 | 18 | SRR825906 |
RNA_Stu_c5_SS1b | Potato, short day stolons | SBS | sRNA | 1,256,537 | 983,594 | 234,282 | 0 | 10M | 34 | 18 | SRR825905 |
RNA_Stu_c5_LL3a | Potato, long day leaf | SBS | sRNA | 1,775,142 | 1,490,691 | 247,265 | 0 | 10M | 34 | 18 | SRR825904 |
RNA_Stu_c5_LL3b | Potato, long day leaf | SBS | sRNA | 1,201,850 | 1,019,024 | 177,927 | 0 | 10M | 34 | 18 | SRR825903 |
RNA_Stu_c5_LL2a | Potato, long day leaf | SBS | sRNA | 4,375,089 | 4,001,009 | 280,574 | 0 | 10M | 34 | 18 | SRR825902 |
RNA_Stu_c5_LL1a | Potato, long day leaf | SBS | sRNA | 2,190,987 | 1,971,445 | 206,490 | 0 | 10M | 34 | 18 | SRR825901 |
RNA_Stu_c5_LS1a | Potato, short day leaf | SBS | sRNA | 1,759,363 | 1,535,697 | 206,083 | 0 | 10M | 34 | 18 | SRR825896 |
RNA_Stu_c5_LS1b | Potato, short day leaf | SBS | sRNA | 1,347,104 | 1,185,025 | 165,381 | 0 | 10M | 34 | 18 | SRR825895 |
RNA_Stu_c5_LS2a | Potato, short day leaf | SBS | sRNA | 2,073,722 | 1,697,008 | 306,096 | 0 | 10M | 34 | 18 | SRR825898 |
RNA_Stu_c5_LS2b | Potato, short day leaf | SBS | sRNA | 1,058,313 | 876,590 | 177,218 | 0 | 10M | 34 | 18 | SRR825897 |
RNA_Stu_c5_LS3a | Potato, short day leaf | SBS | sRNA | 1,930,189 | 1,634,963 | 260,964 | 0 | 10M | 34 | 18 | SRR825900 |
RNA_Stu_c5_LS3b | Potato, short day leaf | SBS | sRNA | 1,117,242 | 954,752 | 168,964 | 0 | 10M | 34 | 18 | SRR825899 |
RNA_Stu_c6_T20C | Potato, tubers 20C | SBS | sRNA | 846,010 | 200,946 | 33,004 | 0 | 10M | 34 | 18 | SRR643260 |
RNA_Stu_c6_T4C | Potato, tubers 4C | SBS | sRNA | 947,295 | 244,096 | 38,327 | 0 | 10M | 34 | 18 | SRR643261 |
STU1 | Potato, mature leaves | SBS | sRNA | 4,186,681 | 2,474,604 | 844,952 | 0 | 10M | 33 | 18 | GSM803582 |
STU2 | Potato, mature flowers | SBS | sRNA | 4,591,677 | 2,575,715 | 994,315 | 0 | 10M | 33 | 18 | GSM803583 |
STU3 | Potato, stolon | SBS | sRNA | 4,225,857 | 2,569,176 | 784,618 | 0 | 10M | 33 | 18 | GSM803584 |
sRNA_STub_c1_t2 | Microtubers were exposed to red light | SBS | sRNA | 5,356,567 | 3,923,209 | 492,789 | 0 | 10M | 34 | 18 | SRR3341163 |
sRNA_STub_c1_t1 | Microtubers grown under dark conditions | SBS | sRNA | 5,777,625 | 4,457,197 | 443,106 | 0 | 10M | 34 | 18 | SRR3341162 |
sRNA_STub_c1_le2 | potato leaf, dark for 3 days and exposed to red light | SBS | sRNA | 5,383,995 | 2,720,745 | 632,693 | 0 | 10M | 34 | 18 | SRR3341161 |
sRNA_STub_c1_l1 | Potato leaf, dark for 3 days | SBS | sRNA | 4,705,893 | 2,592,774 | 536,048 | 0 | 10M | 34 | 18 | SRR3341159 |
sRNA_Stub_c3_PEG | polyethylene glycol 6000 (PEG 6,000) treated leaves | SBS | sRNA | 16,969,936 | 6,877,170 | 2,027,125 | 0 | 10M | 34 | 18 | SRR1103932 |
sRNA_STov_c1_co | seedlings of Solanum torvum Swartz 0 h treated | SBS | sRNA | 9,298,255 | 1,859,835 | 288,916 | 0 | 10M | 34 | 18 | SRR1230923 |
sRNA_STov_c1_6 | seedlings of Solanum torvum Swartz 6 h treated | SBS | sRNA | 10,703,154 | 2,489,322 | 314,300 | 0 | 10M | 34 | 18 | SRR1230925 |
sRNA_STov_c1_12 | seedlings of Solanum torvum Swartz 12 h treated | SBS | sRNA | 12,360,192 | 3,695,743 | 260,542 | 0 | 10M | 34 | 18 | SRR1230926 |
sRNA_STov_c1_18 | seedlings of Solanum torvum Swartz 18 h treated | SBS | sRNA | 10,629,871 | 3,456,252 | 165,319 | 0 | 10M | 34 | 18 | SRR1230927 |
sRNA_GAF23 | vegative, greenhouse | SBS | sRNA | 1,133,497 | 723,359 | 416,649 | 0 | 10M | 32 | 18 | SRR4091038 |
sRNA_GAF46 | vegative, greenhouse | SBS | sRNA | 475,382 | 259,758 | 128,818 | 0 | 10M | 32 | 18 | SRR4091043 |
sRNA_GAF48 | vegative, greenhouse | SBS | sRNA | 872,521 | 452,053 | 224,985 | 0 | 10M | 32 | 18 | SRR4091045 |
sRNA_GAF49 | vegative, greenhouse | SBS | sRNA | 597,055 | 319,653 | 109,094 | 0 | 10M | 32 | 18 | SRR4091046 |
sRNA_GAF63 | vegative, greenhouse | SBS | sRNA | 1,073,373 | 650,727 | 324,325 | 0 | 10M | 32 | 18 | SRR4091056 |
sRNA_GAF64 | vegative, greenhouse | SBS | sRNA | 330,045 | 192,667 | 110,501 | 0 | 10M | 32 | 18 | SRR4091057 |
sRNA_GAF75 | vegative, greenhouse | SBS | sRNA | 765,996 | 435,796 | 244,836 | 0 | 10M | 32 | 18 | SRR4091063 |
sRNA_GAF40 | vegative, greenhouse PVY | SBS | sRNA | 1,018,948 | 253,216 | 153,615 | 0 | 10M | 32 | 18 | SRR4091073 |
sRNA_GAF36 | vegative, greenhouse PVY | SBS | sRNA | 463,854 | 320,966 | 158,354 | 0 | 10M | 32 | 18 | SRR4091070 |
sRNA_GAF66 | vegative, greenhouse PVY | SBS | sRNA | 959,889 | 204,505 | 102,832 | 0 | 10M | 32 | 18 | SRR4091059 |
sRNA_GAF62 | vegative, greenhouse PVY | SBS | sRNA | 534,910 | 249,364 | 119,332 | 0 | 10M | 32 | 18 | SRR4091055 |
sRNA_GAF35 | vegative, greenhouse PLRV | SBS | sRNA | 415,260 | 250,914 | 156,138 | 0 | 10M | 32 | 18 | SRR4091069 |
sRNA_GAF52 | vegative, greenhouse PLRV | SBS | sRNA | 252,467 | 132,783 | 76,338 | 0 | 10M | 32 | 18 | SRR4091049 |
sRNA_GAF50 | vegative, greenhouse PLRV | SBS | sRNA | 395,319 | 189,808 | 77,836 | 0 | 10M | 32 | 18 | SRR4091047 |
sRNA_GAF42 | vegative, greenhouse PLRV | SBS | sRNA | 572,932 | 324,741 | 144,142 | 0 | 10M | 32 | 18 | SRR4091041 |
sRNA_GAF57 | vegative, greenhouse PLRV | SBS | sRNA | 407,019 | 228,574 | 107,237 | 0 | 10M | 32 | 18 | SRR4091052 |
sRNA_GAF38 | vegative, greenhouse PVY, PLRV | SBS | sRNA | 412,034 | 220,113 | 149,103 | 0 | 10M | 32 | 18 | SRR4091072 |
sRNA_GAF74 | vegative, greenhouse PLRV, PVY | SBS | sRNA | 262,342 | 158,910 | 85,040 | 0 | 10M | 32 | 18 | SRR4091062 |
sRNA_GAF26 | vegative, greenhouse PLRV, PVY | SBS | sRNA | 1,145,728 | 197,816 | 118,086 | 0 | 10M | 32 | 18 | SRR4091061 |
sRNA_GAF72 | vegative, greenhouse PLRV, PVY | SBS | sRNA | 368,008 | 169,774 | 74,274 | 0 | 10M | 32 | 18 | SRR4091060 |
sRNA_GAF25 | vegative, greenhouse PLRV, PVY | SBS | sRNA | 738,058 | 464,107 | 231,031 | 0 | 10M | 32 | 18 | SRR4091050 |
sRNA_GAF41 | vegative, greenhouse PLRV, PVY | SBS | sRNA | 483,630 | 250,087 | 155,010 | 0 | 10M | 32 | 18 | SRR4091040 |
sRNA_GAF24 | vegative, greenhouse PLRV, PVY | SBS | sRNA | 952,164 | 573,882 | 334,066 | 0 | 10M | 32 | 18 | SRR4091039 |
sRNA_GAF47 | vegative, greenhouse PVS | SBS | sRNA | 366,454 | 235,587 | 125,528 | 0 | 10M | 32 | 18 | SRR4091044 |
sRNA_GAF32 | vegative, greenhouse PLRV, PVS | SBS | sRNA | 420,757 | 257,876 | 85,019 | 0 | 10M | 32 | 18 | SRR4091068 |
sRNA_GAF51 | vegative, greenhouse PLRV, PVS | SBS | sRNA | 651,341 | 355,665 | 135,502 | 0 | 10M | 32 | 18 | SRR4091048 |
sRNA_GAF58 | vegative, greenhouse PVY, PLRV, PVS | SBS | sRNA | 444,074 | 204,178 | 113,654 | 0 | 10M | 32 | 18 | SRR4091053 |
sRNA_GAF37 | vegative, greenhouse PVX, PLRV | SBS | sRNA | 400,663 | 210,456 | 153,616 | 0 | 10M | 32 | 18 | SRR4091071 |
sRNA_GAF56 | vegative, greenhouse PVT | SBS | sRNA | 332,525 | 178,127 | 96,288 | 0 | 10M | 32 | 18 | SRR4091051 |
sRNA_GAF61 | vegative, greenhouse PVT | SBS | sRNA | 330,138 | 196,409 | 67,709 | 0 | 10M | 32 | 18 | SRR4091054 |
sRNA_GAF65 | vegative, greenhouse PVT | SBS | sRNA | 400,646 | 232,930 | 136,850 | 0 | 10M | 32 | 18 | SRR4091058 |
sRNA_GAF120 | in-vitro plant | SBS | sRNA | 402,793 | 228,643 | 146,861 | 0 | 10M | 32 | 18 | SRR4091066 |
sRNA_GAF119 | in-vitro plant | SBS | sRNA | 276,373 | 200,354 | 98,476 | 0 | 10M | 32 | 18 | SRR4091065 |
sRNA_GAF117 | in-vitro plant | SBS | sRNA | 335,927 | 201,973 | 135,564 | 0 | 10M | 32 | 18 | SRR4091064 |
sRNA_GAF45 | in-vitro plant | SBS | sRNA | 784,428 | 469,211 | 223,104 | 0 | 10M | 32 | 18 | SRR4091042 |
sRNA_GAF127 | in-vitro plant PVY | SBS | sRNA | 946,914 | 234,123 | 118,580 | 0 | 10M | 32 | 18 | SRR4091067 |