Potato Small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
RNA_Stu_c5_STS3a Potato, short day swollen stolonsSBS2,144,1091,811,055294,331010M3418SRR825916
RNA_Stu_c5_STS3b Potato, short day swollen stolonsSBS992,965836,737172,058010M3418SRR825915
RNA_Stu_c5_STS2a Potato, short day swollen stolonsSBS1,160,504901,453256,951010M3418SRR825914
RNA_Stu_c5_STS2b Potato, short day swollen stolonsSBS1,751,6501,357,947368,242010M3418SRR825913
RNA_Stu_c5_STS1a Potato, short day swollen stolonsSBS2,505,4861,746,796578,394010M3418SRR825912
RNA_Stu_c5_STS1b Potato, short day swollen stolonsSBS1,618,3971,128,373409,378010M3418SRR825911
RNA_Stu_c5_SS3a Potato, short day stolonsSBS3,323,9862,255,107682,583010M3418SRR825910
RNA_Stu_c5_SS3b Potato, short day stolonsSBS641,076431,330185,365010M3418SRR825909
RNA_Stu_c5_SS2a Potato, short day stolonsSBS3,834,4472,562,020724,695010M3418SRR825908
RNA_Stu_c5_SS2b Potato, short day stolonsSBS806,638542,538204,093010M3418SRR825907
RNA_Stu_c5_SS1a Potato, short day stolonsSBS2,261,9391,780,528352,825010M3418SRR825906
RNA_Stu_c5_SS1b Potato, short day stolonsSBS1,256,537983,594234,282010M3418SRR825905
RNA_Stu_c5_LL3a Potato, long day leafSBS1,775,1421,490,691247,265010M3418SRR825904
RNA_Stu_c5_LL3b Potato, long day leafSBS1,201,8501,019,024177,927010M3418SRR825903
RNA_Stu_c5_LL2a Potato, long day leafSBS4,375,0894,001,009280,574010M3418SRR825902
RNA_Stu_c5_LL1a Potato, long day leafSBS2,190,9871,971,445206,490010M3418SRR825901
RNA_Stu_c5_LS1a Potato, short day leafSBS1,759,3631,535,697206,083010M3418SRR825896
RNA_Stu_c5_LS1b Potato, short day leafSBS1,347,1041,185,025165,381010M3418SRR825895
RNA_Stu_c5_LS2a Potato, short day leafSBS2,073,7221,697,008306,096010M3418SRR825898
RNA_Stu_c5_LS2b Potato, short day leafSBS1,058,313876,590177,218010M3418SRR825897
RNA_Stu_c5_LS3a Potato, short day leafSBS1,930,1891,634,963260,964010M3418SRR825900
RNA_Stu_c5_LS3b Potato, short day leafSBS1,117,242954,752168,964010M3418SRR825899
RNA_Stu_c6_T20C Potato, tubers 20CSBS846,010200,94633,004010M3418SRR643260
RNA_Stu_c6_T4C Potato, tubers 4CSBS947,295244,09638,327010M3418SRR643261
STU1 Potato, mature leavesSBS4,186,6812,474,604844,95201M3318GSM803582
STU2 Potato, mature flowersSBS4,591,6772,575,715994,31501M3318GSM803583
STU3 Potato, stolonSBS4,225,8572,569,176784,61801M3318GSM803584
sRNA_STub_c1_t2 Microtubers were exposed to red lightSBS5,356,5673,923,209492,78901M3418SRR3341163
sRNA_STub_c1_t1 Microtubers grown under dark conditionsSBS5,777,6254,457,197443,10601M3418SRR3341162
sRNA_STub_c1_le2 potato leaf, dark for 3 days and exposed to red lightSBS5,383,9952,720,745632,69301M3418SRR3341161
sRNA_STub_c1_l1 Potato leaf, dark for 3 daysSBS4,705,8932,592,774536,04801M3418SRR3341159
sRNA_Stub_c3_PEG polyethylene glycol 6000 (PEG 6,000) treated leavesSBS16,969,9366,877,1702,027,12501M3418SRR1103932
sRNA_STov_c1_co seedlings of Solanum torvum Swartz 0 h treatedSBS9,298,2551,859,835288,91601M3418SRR1230923
sRNA_STov_c1_6 seedlings of Solanum torvum Swartz 6 h treatedSBS10,703,1542,489,322314,30001M3418SRR1230925
sRNA_STov_c1_12 seedlings of Solanum torvum Swartz 12 h treatedSBS12,360,1923,695,743260,54201M3418SRR1230926
sRNA_STov_c1_18 seedlings of Solanum torvum Swartz 18 h treatedSBS10,629,8713,456,252165,31901M3418SRR1230927
sRNA_GAF23 vegative, greenhouseSBS1,133,497723,359416,64901M3218SRR4091038
sRNA_GAF46 vegative, greenhouseSBS475,382259,758128,81801M3218SRR4091043
sRNA_GAF48 vegative, greenhouseSBS872,521452,053224,98501M3218SRR4091045
sRNA_GAF49 vegative, greenhouseSBS597,055319,653109,09401M3218SRR4091046
sRNA_GAF63 vegative, greenhouseSBS1,073,373650,727324,32501M3218SRR4091056
sRNA_GAF64 vegative, greenhouseSBS330,045192,667110,50101M3218SRR4091057
sRNA_GAF75 vegative, greenhouseSBS765,996435,796244,83601M3218SRR4091063
sRNA_GAF40 vegative, greenhouse PVYSBS1,018,948253,216153,61501M3218SRR4091073
sRNA_GAF36 vegative, greenhouse PVYSBS463,854320,966158,35401M3218SRR4091070
sRNA_GAF66 vegative, greenhouse PVYSBS959,889204,505102,83201M3218SRR4091059
sRNA_GAF62 vegative, greenhouse PVYSBS534,910249,364119,33201M3218SRR4091055
sRNA_GAF35 vegative, greenhouse PLRVSBS415,260250,914156,13801M3218SRR4091069
sRNA_GAF52 vegative, greenhouse PLRVSBS252,467132,78376,33801M3218SRR4091049
sRNA_GAF50 vegative, greenhouse PLRVSBS395,319189,80877,83601M3218SRR4091047
sRNA_GAF42 vegative, greenhouse PLRVSBS572,932324,741144,14201M3218SRR4091041
sRNA_GAF57 vegative, greenhouse PLRVSBS407,019228,574107,23701M3218SRR4091052
sRNA_GAF38 vegative, greenhouse PVY, PLRVSBS412,034220,113149,10301M3218SRR4091072
sRNA_GAF74 vegative, greenhouse PLRV, PVYSBS262,342158,91085,04001M3218SRR4091062
sRNA_GAF26 vegative, greenhouse PLRV, PVYSBS1,145,728197,816118,08601M3218SRR4091061
sRNA_GAF72 vegative, greenhouse PLRV, PVYSBS368,008169,77474,27401M3218SRR4091060
sRNA_GAF25 vegative, greenhouse PLRV, PVYSBS738,058464,107231,03101M3218SRR4091050
sRNA_GAF41 vegative, greenhouse PLRV, PVYSBS483,630250,087155,01001M3218SRR4091040
sRNA_GAF24 vegative, greenhouse PLRV, PVYSBS952,164573,882334,06601M3218SRR4091039
sRNA_GAF47 vegative, greenhouse PVSSBS366,454235,587125,52801M3218SRR4091044
sRNA_GAF32 vegative, greenhouse PLRV, PVSSBS420,757257,87685,01901M3218SRR4091068
sRNA_GAF51 vegative, greenhouse PLRV, PVSSBS651,341355,665135,50201M3218SRR4091048
sRNA_GAF58 vegative, greenhouse PVY, PLRV, PVSSBS444,074204,178113,65401M3218SRR4091053
sRNA_GAF37 vegative, greenhouse PVX, PLRVSBS400,663210,456153,61601M3218SRR4091071
sRNA_GAF56 vegative, greenhouse PVTSBS332,525178,12796,28801M3218SRR4091051
sRNA_GAF61 vegative, greenhouse PVTSBS330,138196,40967,70901M3218SRR4091054
sRNA_GAF65 vegative, greenhouse PVTSBS400,646232,930136,85001M3218SRR4091058
sRNA_GAF120 in-vitro plantSBS402,793228,643146,86101M3218SRR4091066
sRNA_GAF119 in-vitro plantSBS276,373200,35498,47601M3218SRR4091065
sRNA_GAF117 in-vitro plantSBS335,927201,973135,56401M3218SRR4091064
sRNA_GAF45 in-vitro plantSBS784,428469,211223,10401M3218SRR4091042
sRNA_GAF127 in-vitro plant PVYSBS946,914234,123118,58001M3218SRR4091067



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".