Medicago Small RNA Library Information

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Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
1507OE miR1507 over-expression in Medicago hairy rootsSBS34,628,44911,343,9412,450,59816,684,87610M3418GSM3318728
1507OE_2 miR1507 over-expression in Medicago hairy roots, rep 2SBS35,843,48715,547,1004,501,53111,974,50410M3418GSM3318729
2109OE miR2109 over-expression in Medicago hairy rootsSBS26,888,4999,165,6452,578,35312,229,84910M3418GSM3318730
2109OE_2 miR2109 over-expression in Medicago hairy roots, rep 2SBS15,804,2794,985,4241,965,9018,040,53010M3418GSM3318731
2118aOE miR2118a over-expression in Medicago hairy rootsSBS33,438,89914,266,1673,439,97612,276,90610M3418GSM3318732
2118aOE_2 miR2118a over-expression in Medicago hairy roots, rep 2SBS23,114,1658,233,0112,989,64010,610,61210M3418GSM3318733
2118bOE miR2118b over-expression in Medicago hairy rootsSBS33,449,3649,945,5802,552,15717,437,53010M3418GSM3318734
2118bOE_2 miR2118b over-expression in Medicago hairy roots, rep 2SBS34,798,86212,423,3824,165,17215,515,46610M3418GSM3318735
2118cOE miR2118c over-expression in Medicago hairy rootsSBS27,534,8688,563,9072,272,10812,812,53710M3418GSM3318736
2118cOE_4 miR2118c over-expression in Medicago hairy roots, rep 4SBS33,892,25713,512,1543,567,30012,014,00610M3418GSM3318737
MtOE_control Empty vector control for miRNA over-expression lines, in Medicago hairy rootsSBS34,254,17412,682,0082,691,82915,389,22310M3418GSM3318726
MtOE_control_2 Empty vector control for miRNA over-expression lines, in Medicago hairy rootsSBS23,470,4437,333,1402,538,01012,150,22510M3418GSM3318727
MIM1507_1 Medicago target mimic against miR1507 rep 1SBS35,481,19610,856,0943,117,46515,499,18710M3418GSM3318740
MIM1507_2 Medicago target mimic against miR1507 rep 2SBS31,236,5793,687,7691,191,08418,446,76110M3418GSM3318741
MIM2109_1 Medicago target mimic against miR2109 rep 1SBS36,256,09114,147,2753,924,90914,447,81210M3418GSM3318742
MIM2109_2 Medicago target mimic against miR2109 rep 2SBS33,842,81814,914,1833,790,18210,898,59710M3418GSM3318743
MIM2118_1 Medicago target mimic against miR2118 rep 1SBS33,135,42412,200,4403,397,80114,240,73710M3418GSM3318744
MIM2118_2 Medicago target mimic against miR2118 rep 2SBS33,360,40310,566,4053,004,28712,950,46810M3418GSM3318745
MIMall_v2_1 Medicago target mimics against miR1507, miR2109, and miR2118 version 2 rep 1SBS38,847,49414,370,9714,125,59615,512,74110M3418GSM3318746
MIMall_v2_2 Medicago target mimics againstmiR1507, miR2109, and miR2118 version 2 rep 2SBS35,019,9335,118,7421,724,20820,419,10910M3418GSM3318747
MIMck_1 Medicago target mimic control, rep 1SBS33,554,86112,566,0653,295,56813,940,28610M3418GSM3318738
MIMck_2 Medicago target mimic control, rep 2SBS33,185,67912,525,3163,027,25912,767,52310M3418GSM3318739
MLEF2 Medicago truncatula LeafSBS30,956,69216,203,5433,045,9599,826,44210M3418GSM3318718
MSDL2 sRNA libraries of Medicago seedlingSBS23,702,4139,860,2481,768,19310,625,97410M3418GSM3318720
MtWt Control for RDR2 RNAi line, flower tissueSBS48,293,30624,371,1813,911,86410,949,13610M3418GSM3318721
MYR2 sRNA libraries of Medicago root grown by Sherrier labSBS23,406,3798,202,6612,280,5146,587,05410M3418GSM3318719
G643815 M. truncatula roots inoculated with Glomus intraradices (3 wpi)SBS7,737,0884,122,4012,000,840879,74410M3118GSM643815
G643816 M. truncatula roots, uninoculatedSBS7,655,1704,048,7012,045,1481,111,75710M3118GSM643816
14d_DeNodRoot Medicago nodules and roots before and after NO3 treatmentSBS22,253,3114,491,5822,111,48113,027,14010M3418GSM3318723
16d_DeNodRoot Medicago nodules and roots before and after NO3 treatmentSBS11,214,2582,053,771959,8656,510,52910M3418GSM3318725
14d_Nodule Medicago nodules and roots before and after NO3 treatmentSBS33,000,72510,627,0344,014,07511,006,15910M3418GSM3318722
16d_Nodule Medicago nodules and roots before and after NO3 treatmentSBS24,992,5786,495,7132,461,5868,714,04210M3418GSM3318724



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".