Medicago Small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
1507OE miR1507 over-expressionSBS34,628,44911,343,9412,450,59816,684,87610M3418GSM1651997
1507OE_2 miR1507 over-expression rep 2SBS35,843,48715,547,1004,501,53111,974,50410M3418GSM1651998
2109OE miR2109 over-expressionSBS26,888,4999,165,6452,578,35312,229,84910M3418GSM1651999
2109OE_2 miR2109 over-expression rep 2SBS15,804,2794,985,4241,965,9018,040,53010M3418GSM1652000
2118aOE miR2118a over-expressionSBS33,438,89914,266,1673,439,97612,276,90610M3418GSM1652001
2118aOE_2 miR2118a over-expression rep 2SBS23,114,1658,233,0112,989,64010,610,61210M3418GSM1652002
2118bOE miR2118b over-expressionSBS33,449,3649,945,5802,552,15717,437,53010M3418GSM1652003
2118bOE_2 miR2118b over-expression rep 2SBS34,798,86212,423,3824,165,17215,515,46610M3418GSM1652004
2118cOE miR2118c over-expressionSBS27,534,8688,563,9072,272,10812,812,53710M3418GSM1652005
2118cOE_4 miR2118c over-expression rep 4SBS33,892,25713,512,1543,567,30012,014,00610M3418GSM1652006
MtOE_control Empty vector control for miRNA over-expression linesSBS34,254,17412,682,0082,691,82915,389,22310M3418GSM1651995
MtOE_control_2 Empty vector control for miRNA over-expression linesSBS23,470,4437,333,1402,538,01012,150,22510M3418GSM1651996
MIM1507_1 Medicago target mimics miR1507 rep 1SBS35,481,19610,856,0943,117,46515,499,18710M3418GSM1652009
MIM1507_2 Medicago target mimics miR1507 rep 2SBS31,236,5793,687,7691,191,08418,446,76110M3418GSM1652010
MIM2109_1 Medicago target mimics miR2109 rep 1SBS36,256,09114,147,2753,924,90914,447,81210M3418GSM1652011
MIM2109_2 Medicago target mimics miR2109 rep 2SBS33,842,81814,914,1833,790,18210,898,59710M3418GSM1652012
MIM2118_1 Medicago target mimics miR2118 rep 1SBS33,135,42412,200,4403,397,80114,240,73710M3418GSM1652013
MIM2118_2 Medicago target mimics miR2118 rep 2SBS33,360,40310,566,4053,004,28712,950,46810M3418GSM1652014
MIMall_v2_1 Medicago target mimics miR1507, miR2109, and miR2118 version 2 rep 1SBS38,847,49414,370,9714,125,59615,512,74110M3418GSM1652015
MIMall_v2_2 Medicago target mimics miR1507, miR2109, and miR2118 version 2 rep 2SBS35,019,9335,118,7421,724,20820,419,10910M3418GSM1652016
MIMck_1 Medicago target mimics control rep 1SBS33,554,86112,566,0653,295,56813,940,28610M3418GSM1652007
MIMck_2 Medicago target mimics control rep 2SBS33,185,67912,525,3163,027,25912,767,52310M3418GSM1652008



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".