Maize Small RNA Library Information

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Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
GEO
Accession
Number
0.2 Fertile_r1 maize fertile anthers, 0.2 mm, rep 1.SBS12,896,3669,791,3321,340,79497,15810M
0.4 Fertile_r1 maize fertile anthers, 0.4 mm, rep 1.SBS35,286,90426,740,1084,031,504457,34710M
0.7 Fertile_r1 maize fertile anthers, 0.7 mm, rep 1.SBS34,045,56428,303,5652,360,148517,79510M
1.0 Fertile_r1 maize fertile anthers, 1.0 mm, rep 1.SBS34,019,13627,917,1052,172,129901,63610M
1.5 Fertile_r1 maize fertile anthers, 1.5 mm, rep 1.SBS37,521,38930,354,8751,853,040493,54010M
2.0 Fertile_r1 maize fertile anthers, 2.0 mm, rep 1.SBS35,796,93727,621,4142,454,087575,91910M
2.5 Fertile_r1 maize fertile anthers, 2.5 mm, rep 1.SBS55,306,86745,996,4462,974,2571,288,80910M
3.0 Fertile_r1 maize fertile anthers, 3.0 mm, rep 1.SBS26,285,04822,409,0731,697,278575,75710M
4.0 Fertile_r1 maize fertile anthers, 4.0 mm, rep 1.SBS40,210,29735,006,0121,339,749902,93610M
5.0 Fertile_r1 maize fertile anthers, 5.0 mm, rep 1.SBS29,748,54325,965,9131,421,459541,67110M
PLN Fertile_r1 maize mature pollen, rep 1.SBS33,201,39128,333,8671,711,538611,04910M
0.2 Fertile_r2 maize fertile anthers, 0.2 mm rep 2.SBS21,549,90116,437,1691,314,268184,50010M
0.4 Fertile_r2 maize fertile anthers, 0.4 mm rep 2.SBS36,257,47027,116,7441,228,663125,57010M
0.7 Fertile_r2 maize fertile anthers, 0.7 mm rep 2.SBS41,837,82530,925,6971,558,590245,24310M
1.0 Fertile_r2 maize fertile anthers, 1.0 mm rep 2.SBS37,594,67830,416,8151,285,286475,49510M
1.5 Fertile_r2 maize fertile anthers, 1.5 mm rep 2.SBS27,713,84020,963,5471,019,106251,99810M
2.0 Fertile_r2 maize fertile anthers, 2.0 mm rep 2.SBS48,664,03837,454,7671,637,713617,66910M
2.5 Fertile_r2 maize fertile anthers, 2.5 mm rep 2.SBS50,543,59238,626,2981,762,472901,09010M
3.0 Fertile_r2 maize fertile anthers, 3.0 mm rep 2.SBS28,476,78622,526,9881,459,631458,86910M
4.0 Fertile_r2 maize fertile anthers, 4.0 mm rep 2.SBS27,693,41722,530,0431,863,950380,19110M
5.0 Fertile_r2 maize fertile anthers, 5.0 mm rep 2SBS27,562,22722,923,492918,854407,06810M
PLN Fertile_r2 maize mature pollen, rep 2SBS33,953,60027,712,546937,997526,30610M
0.4 Fertile, r3 maize fertile anthers, 0.4 mm, rep 3SBS25,908,57618,513,2584,316,185163,78710M
0.7 Fertile, r3 maize fertile anthers, 0.7 mm, rep 3SBS22,135,68115,832,7693,082,409134,10510M
1.0 Fertile, r3 maize fertile anthers, 1.0 mm, rep 3.SBS29,761,64520,960,8853,139,278816,52210M
1.5 Fertile, r3 maize fertile anthers, 1.5 mm, rep 3.SBS26,530,20717,964,5532,531,679232,66010M
2.0 Fertile_r3 maize fertile anthers, 2.0 mm, rep 3.SBS23,136,15317,117,4731,821,118294,41910M
2.5 Fertile_r3 maize fertile anthers, 2.5 mm, rep 3.SBS24,169,55318,703,9412,095,893255,73510M
3.0 Fertile_r3 maize fertile anthers, 3.0 mm, rep 3.SBS23,155,44619,135,3662,209,643473,33910M
4.0 Fertile_r3 maize fertile anthers, 4.0 mm, rep 3.SBS23,592,08619,363,3153,094,277481,95810M
5.0 Fertile_r3 maize fertile anthers, 5.0 mm, rep 3.SBS23,453,24920,943,5661,260,749499,97310M
PollenFertile_r3 maize mature pollen, rep 3.SBS20,949,77718,715,984864,924497,31910M
0.4 msca1_r1 msca1 maize anthers, 0.4 mm rep 1.SBS27,411,33719,239,211627,061318,44410M
0.7 msca1_r1 msca1 maize anthers, 0.7 mm rep 1.SBS59,440,68345,066,2891,661,519478,53810M
1.0 msca1_r1 msca1 maize anthers, 1.0 mm rep 1.SBS55,737,19442,082,2682,178,054448,70010M
1.5 msca1, r1 msca1 maize anthers, 1.5 mm rep 1.SBS46,311,82338,767,7851,962,187463,41610M
2.0 msca1, r1 msca1 maize anthers, 2.0 mm rep 1.SBS42,201,46135,880,6892,905,813718,27410M
0.4 msca1, r2 msca1 maize anthers, 0.4 mm rep 2.SBS28,727,24519,870,8734,116,707287,69910M
0.7 msca1, r2 msca1 maize anthers, 0.7 mm rep 2.SBS23,976,87417,686,6352,841,017188,91510M
1.0 msca1, r2 msca1 maize anthers, 1.0 mm rep 2.SBS29,907,55516,499,5283,496,999297,25310M
1.5 msca1, r2 msca1 maize anthers, 1.5 mm rep 2.SBS27,780,35119,154,2805,256,317369,00810M
2.0 msca1, r2 msca1 maize anthers, 2.0 mm rep 2.SBS29,416,75920,385,4385,123,850429,57610M
0.4 ocl4, r1 ocl4 maize anthers, 0.4 mm rep 1.SBS55,691,54045,593,4335,141,2401,023,94110M
0.7 ocl4, r1 ocl4 maize anthers, 0.7 mm rep 1.SBS22,313,23219,121,5461,193,050300,56110M
1.0 ocl4, r1 ocl4 maize anthers, 1.0 mm rep 1.SBS29,806,62525,077,2572,305,845351,90110M
1.5 ocl4, r1 ocl4 maize anthers, 1.5 mm rep 1.SBS29,278,46923,653,8782,293,249333,70410M
2.0 ocl4, r1 ocl4 maize anthers, 2.0 mm rep 1.SBS33,040,04226,486,3042,060,051514,97310M
0.4 ocl4, r2 ocl4 maize anthers, 0.4 mm rep 2.SBS21,950,61816,929,6714,325,372252,26310M
0.7 ocl4, r2 ocl4 maize anthers, 0.7 mm rep 2.SBS33,723,31826,051,1936,210,148461,73210M
1.0 ocl4, r2 ocl4 maize anthers, 1.0 mm rep 2.SBS32,660,81725,016,6035,391,786824,14710M
1.5 ocl4, r2 ocl4 maize anthers, 1.5 mm rep 2.SBS30,812,34222,171,0382,901,146469,58610M
2.0 ocl4, r2 ocl4 maize anthers, 2.0 mm rep 2.SBS35,018,55724,944,9372,458,219417,39310M
0.4 mac1, r1 mac1 maize anthers, 0.4 mm rep 2.SBS22,736,86417,986,3253,006,766386,01710M
0.7 mac1, r1 mac1 maize anthers, 0.7 mm rep 1.SBS13,809,82210,799,6731,449,17698,96610M
1.0 mac1, r1 mac1 maize anthers, 1.0 mm rep 1.SBS28,443,45021,923,8162,788,888384,53410M
1.5 mac1, r1 mac1 maize anthers, 1.5 mm rep 1.SBS87,956,85269,423,2566,665,3381,538,43810M
2.0 mac1, r1 mac1 maize anthers, 2.0 mm rep 1.SBS13,649,13911,098,5921,350,080331,45610M
0.4 mac1, r2 mac1 maize anthers, 0.4 mm rep 1.SBS22,849,12517,798,3573,198,364332,67110M
0.7 mac1, r2 mac1 maize anthers, 0.7 mm rep 2.SBS28,981,72019,888,6693,329,617256,49510M
1.0 mac1, r2 mac1 maize anthers, 1.0 mm rep 2.SBS27,639,03418,057,4943,282,284304,80910M
1.5 mac1, r2 mac1 maize anthers, 1.5 mm rep 2.SBS27,594,08620,245,9523,072,547521,89410M
2.0 mac1, r2 mac1 maize anthers, 2.0 mm rep 2.SBS30,501,47021,200,0703,970,9081,012,77610M
0.4 ms23_ r1 ms23 maize anthers, line 610_19 (sterile), 0.4 mmSBS39,740,43833,326,2874,936,858341,84910MGSM2415843
0.7 ms23_r1 ms23 maize anthers, line 610_1 (sterile), 0.7 mmSBS32,941,16427,770,6003,117,411390,49110MGSM2415844
0.7 ms23_r2 ms23 maize anthers, line 610_19 (sterile), 0.7 mmSBS39,416,75233,221,8463,430,935522,12810MGSM2415845
1.0 ms23_r1 ms23 maize anthers, line 610_2 (sterile), 1.0 mmSBS39,001,90731,919,5824,548,145453,11510MGSM2415846
1.0 ms23_r2 ms23 maize anthers, line 610_16 (sterile), 1.0 mmSBS39,915,74333,974,8263,547,125518,11410MGSM2415847
1.5 ms23_r1 ms23 maize anthers, line 610_2 (sterile), 1.5 mmSBS42,336,65335,160,0503,667,335607,33210MGSM2415848
1.5 ms23_r2 ms23 maize anthers, line 610_16 (sterile), 1.5 mmSBS39,239,15532,174,8353,886,863523,56410MGSM2415849
2.0 ms23_r1 ms23 maize anthers, line 610_2 (sterile), 2.0 mmSBS45,636,25337,890,1554,102,395790,14510MGSM2415850
2.0 ms23_r2 ms23 maize anthers, line 610_16 (sterile), 2.0 mmSBS29,803,02024,716,2523,072,766487,15210MGSM2415851
0.4 am1-489, r1 ameiotic1 (489) maize anthers, male sterile, 0.4 mm rep 1.SBS51,538,49045,138,4811,776,650200,86410M
0.7 am1-489, r1 ameiotic1 (489) maize anthers, male sterile, 0.7 mm rep 1.SBS44,424,55337,612,1012,331,630442,72010M
1.0 am1-489, r1 ameiotic1 (489) maize anthers, male sterile, 1.0 mm rep 1.SBS59,996,98050,551,5383,083,678577,68510M
1.5 am1-489, r1 ameiotic1 (489) maize anthers, male sterile, 1.5 mm rep 1.SBS20,232,93616,851,1441,227,689189,81610M
1.5 am1-489, r2 ameiotic1 (489) maize anthers, male sterile, 1.5 mm rep 2.SBS40,436,86132,610,9314,194,304807,44910M
1.0 am1-p, r1 ameiotic1 (praI) maize anthers, male sterile, 1.0 mm rep 1.SBS48,944,06037,911,2533,877,8821,966,45310M
1.0 am1-p, r2 ameiotic1 (praI) maize anthers, male sterile, 1.0 mm rep 2.SBS36,561,95127,599,9592,938,5781,636,19510M
1.0 am1-p, r3 ameiotic1 (praI) maize anthers, male sterile, 1.0 mm rep 3.SBS44,856,17835,576,5494,176,5621,084,85310M
1.5 am1-p, r1 ameiotic1 (praI) maize anthers, male sterile, 1.5 mm rep 1.SBS47,168,13039,565,0302,341,505593,33210M
1.5 am1-p, r2 ameiotic1 (praI) maize anthers, male sterile, 1.5 mm rep 2.SBS19,533,48414,370,6621,721,453387,31610M
1.5 am1-p, r3 ameiotic1 (praI) maize anthers, male sterile, 1.5 mm rep 3.SBS31,583,50224,278,1352,671,334557,32310M
1.5 WT-489, r1 Fertile sib (of am1-489), maize anthers, 1.5 mm rep 1.SBS47,289,14139,997,1662,832,257667,21810M
1.5 WT-489, r2 Fertile sib (of am1-489), maize anthers, 1.5 mm rep 2.SBS51,992,42843,087,7723,792,587853,99710M
1.5 WT-489, r3 Fertile sib (of am1-489), maize anthers, 1.5 mm rep 3.SBS43,986,96836,559,0063,517,881756,09910M
1.25 am1-p, r1 ameiotic1 (praI) maize anthers 1.25 mm, rep 1SBS21,374,18015,118,5441,915,094516,84610M
1.25 am1-p, r2 ameiotic1 (praI) maize anthers 1.25 mm, rep 2SBS17,285,23213,449,8311,804,567480,00210M
1.25 am1-p, r3 ameiotic1 (praI) maize anthers 1.25 mm, rep 3SBS26,822,31119,206,3572,716,6751,074,67010M
1.25 WT-p, r1 Fertile sib (of am1-praI), maize anthers 1.25 mm, rep 1SBS38,255,51726,199,6273,249,8531,002,35010M
1.25 WT-p, r2 Fertile sib (of am1-praI), maize anthers 1.25 mm, rep 2SBS34,629,11523,729,2563,701,6351,145,72310M
1.25 WT-p, r3 Fertile sib (of am1-praI), maize anthers 1.25 mm, rep 3SBS31,319,77922,873,5062,954,775766,51310M
1.25 am1-489, r1 am1-489 maize anthers 1.25 mm, rep 1SBS21,891,53017,921,2982,197,102594,07710M
1.25 am1-489_r2 am1-489 maize anthers 1.25 mm, rep 2SBS15,347,29012,623,5101,845,695415,89210M
1.25 WT-489_r1 Fertile sib (of am1-489), maize anthers 1.25 mm, rep 1SBS17,987,20114,994,4911,750,306449,78010M
1.25 WT-489_r2 Fertile sib (of am1-489), maize anthers 1.25 mm, rep 2SBS18,273,86515,229,7831,712,889370,85610M
1.25 WT-489_r3 Fertile sib (of am1-489), maize anthers 1.25 mm, rep 3SBS16,772,03714,113,3411,660,011324,56710M



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50