Maize B73 small RNA Library Information

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Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
Zma1 LeavesSBSsRNA3,796,4022,790,122831,122362,5643M3318GSM433620
Zma2 Female inflorescence (Ears)SBSsRNA4,644,8253,914,9172,007,14966,9633M3318GSM433621
Zma3 Male inflorescence (Tassels)SBSsRNA4,207,6013,671,5541,995,23438,4213M3318GSM433622
Smop1 Flower - mop1 MaizeSBSsRNA7,265,1485,257,0951,231,89944,2813M2715GSM306488
Swt Flower - wild-type MaizeSBSsRNA5,768,3133,624,9981,844,61814,5663M2715GSM306487
MzSeShoots seedling shootsSBSsRNA4,406,0552,756,8651,112,407183,7333M3018GSM381716
MzSeRoots seedling rootsSBSsRNA3,960,3451,500,769429,237105,4643M3018GSM381738
MzEar Total RNA from maize ear tissuesSBSsRNA5,110,3224,530,8273,165,22917,7233M3018GSM448853
MzPollen Total RNA from maize pollen tissuesSBSsRNA8,665,5877,083,5843,460,593182,9543M3018GSM448854
MzRoots Total RNA from maize root tissuesSBSsRNA7,672,2605,828,4193,274,236453,6583M3018GSM448855
MzSeedlings Total RNA from maize seedling tissuesSBSsRNA7,916,2256,473,1093,176,728349,9693M3018GSM448856
MzTassel Total RNA from maize tassel tissuesSBSsRNA8,207,2357,189,5134,276,28588,8403M3018GSM448857
ht_rmr2_1 Maize RMR2/rmr2-1 (+/-) heterozygote (not mutant), immature earsSBSsRNA33,671,75618,345,4666,291,66770,86210M3118GSM913702
ho_rmr2_1 Maize mutant rmr2-1 (-/-) immature earsSBSsRNA6,521,5435,139,6921,666,74320,17710M3118GSM913701
Ear1_Control homozygous wild-types, two individuals combined, mop1_control_ear_pair_1SBSsRNA2,586,7542,088,364983,18237,21210M3418SRX708789
Ear2_Control homozygous mop1 wild-type, mop1_control_ear_pair_2SBSsRNA15,974,94812,877,1734,054,454268,98510M3418SRX708790
Ear1_mop1 mop1-1 homozygotes, two individuals combined, mop1-1_ear_pair_1SBSsRNA3,309,5422,471,196460,206172,44610M3418SRX708787
Ear2_mop1 mop1-1 homozygotes, two individuals combined, mop1-1_ear_pair_2SBSsRNA11,158,2928,274,475909,924691,87410M3418SRX708788
Out_ear_Unfrt maize unfertilized outer earSBSsRNA49,260,40844,916,48312,427,207153,10525M3418SRX120259
WT_h1_rp1 wildtype B73 as control (for hen1); replicate #1SBSsRNA48,831,52039,613,11111,305,681921,05225M3418GSM1178887
hen1_rp1 hen1 mutant; replicate #1SBSsRNA33,477,12224,409,7486,225,8481,279,46825M3418GSM1178886
0_3mmAnt1 maize anthers 0.3mm, rep 1SBSsRNA17,300,86711,943,6041,374,431279,23025M3418GSM4478512
0_3mmAnt2 maize anthers 0.3mm, rep 2SBSsRNA14,806,83010,529,2111,221,963145,78625M3418GSM4478513
ant_0_2_2 maize anthers 0.2mm, rep 2SBSsRNA44,710,78736,475,9196,360,597514,07125M3418GSM4478514
ant_0_2_3 maize anthers 0.2mm, rep 3SBSsRNA40,254,55733,115,9825,192,671578,89825M3418GSM4478515



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50