Maize B73 small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
Zma1 LeavesSBSsRNA3,796,4022,616,593828,466522,5833M3318GSM433620
Zma2 Female inflorescence (Ears)SBSsRNA4,644,8253,885,0472,000,91384,9753M3318GSM433621
Zma3 Male inflorescence (Tassels)SBSsRNA4,207,6013,650,2821,989,14849,2233M3318GSM433622
Smop1 Flower - mop1 MaizeSBSsRNA7,265,1485,212,7021,227,84474,7293M2715GSM306488
Swt Flower - wild-type MaizeSBSsRNA5,768,3133,613,7711,839,48618,8453M2715GSM306487
MzSeShoots seedling shootsSBSsRNA4,406,0552,711,8201,109,369212,2383M3018GSM381716
MzSeRoots seedling rootsSBSsRNA3,960,3451,465,743427,952126,3013M3018GSM381738
MzEar Total RNA from maize ear tissuesSBSsRNA5,110,3224,515,3413,155,87822,5313M3018GSM448853
MzPollen Total RNA from maize pollen tissuesSBSsRNA8,665,5877,024,6843,445,313215,7453M3018GSM448854
MzRoots Total RNA from maize root tissuesSBSsRNA7,672,2605,673,8073,263,625574,3753M3018GSM448855
MzSeedlings Total RNA from maize seedling tissuesSBSsRNA7,916,2256,354,2083,167,303438,2543M3018GSM448856
MzTassel Total RNA from maize tassel tissuesSBSsRNA8,207,2357,068,3394,262,982186,5123M3018GSM448857
ht_rmr2_1 Maize RMR2/rmr2-1 (+/-) heterozygote (not mutant), immature earsSBSsRNA33,671,75618,291,5246,272,26885,14410M3118GSM913702
ho_rmr2_1 Maize mutant rmr2-1 (-/-) immature earsSBSsRNA6,521,5435,087,6391,661,84159,73310M3118GSM913701
Ear1_Control homozygous wild-types, two individuals combined, mop1_control_ear_pair_1SBSsRNA2,586,7542,078,268979,04239,48310M3418SRX708789
Ear2_Control homozygous mop1 wild-type, mop1_control_ear_pair_2SBSsRNA15,974,94812,797,0514,039,473298,15810M3418SRX708790
Ear1_mop1 mop1-1 homozygotes, two individuals combined, mop1-1_ear_pair_1SBSsRNA3,309,5422,445,159456,753177,26810M3418SRX708787
Ear2_mop1 mop1-1 homozygotes, two individuals combined, mop1-1_ear_pair_2SBSsRNA11,158,2928,109,146904,713784,79210M3418SRX708788
Out_ear_Unfrt maize unfertilized outer earSBSsRNA49,260,40844,694,56512,391,645268,72025M3418SRX120259
WT_h1_rp1 wildtype B73 as control (for hen1); replicate #1SBSsRNA48,831,52038,629,27211,269,1241,808,64525M3418GSM1178887
hen1_rp1 hen1 mutant; replicate #1SBSsRNA33,477,12221,494,5956,203,8304,103,09225M3418GSM1178886
0_3mmAnt1 maize anthers 0.3mm, rep 1SBSsRNA17,300,86711,514,8521,366,763467,22725M3418GSM4478512
0_3mmAnt2 maize anthers 0.3mm, rep 2SBSsRNA14,806,83010,247,8681,215,475236,31125M3418GSM4478513
ant_0_2_2 maize anthers 0.2mm, rep 2SBSsRNA44,710,78733,444,0426,338,7703,341,29725M3418GSM4478514
ant_0_2_3 maize anthers 0.2mm, rep 3SBSsRNA40,254,55729,146,1905,173,3574,238,76125M3418GSM4478515



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50