Maize Small RNA Library Information

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Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
Zma1 LeavesSBS3,796,4022,679,365832,169459,8113M3318GSM433620
Zma2 Female inflorescence (Ears)SBS4,644,8253,909,3782,003,43960,6443M3318GSM433621
Zma3 Male inflorescence (Tassels)SBS4,207,6013,663,8431,990,87535,6623M3318GSM433622
Smop1 Flower - mop1 MaizeSBS7,265,1485,250,2021,230,92837,2293M3415GSM306488
Swt Flower - wild-type MaizeSBS5,768,3133,618,8961,840,77713,7203M3415GSM306487
MzSeShoots seedling shootsSBS4,406,0552,759,4391,113,275164,6193M3018GSM381716
MzSeRoots seedling rootsSBS3,960,3451,506,344430,80685,7003M3018GSM381738
MzEar Total RNA from maize ear tissuesSBS5,110,3224,522,1933,158,13215,6793M3418GSM448853
MzPollen Total RNA from maize pollen tissuesSBS8,665,5877,067,1893,450,291173,2403M3418GSM448854
MzRoots Total RNA from maize root tissuesSBS7,672,2605,825,6123,272,782422,5703M3018GSM448855
MzSeedlings Total RNA from maize seedling tissuesSBS7,916,2256,476,8743,176,876315,5883M3018GSM448856
MzTassel Total RNA from maize tassel tissuesSBS8,207,2357,181,6564,268,75573,1953M3018GSM448857
ht_rmr2_1 Maize RMR2/rmr2-1 (+/-) heterozygote (not mutant), immature earsSBS33,671,75618,318,1366,277,03158,5321M3118GSM913702
ho_rmr2_1 Maize mutant rmr2-1 (-/-) immature earsSBS6,521,5435,140,5831,665,9616,7891M3118GSM913701
WT_h1_rp1 wildtype B73 as control (for hen1); replicate #1SBS48,831,52039,555,54311,284,117882,37425M3418GSM1178887
hen1_rp1 hen1 mutant; replicate #1SBS33,477,12224,419,6876,222,1971,178,00025M3418GSM1178886
Out_ear_Unfrt maize unfertilized outer earSBS49,260,40844,841,15812,399,569122,12750M3418SRX120259
Ear1_mop1 mop1-1 homozygotes, two individuals combined, mop1-1_ear_pair_1SBS3,309,5422,476,630462,166145,79710M3418SRX708787
Ear2_mop1 mop1-1 homozygotes, two individuals combined, mop1-1_ear_pair_2SBS11,158,2928,300,865917,205593,07310M3418SRX708788
Ear1_Control homozygous wild-types, two individuals combined, mop1_control_ear_pair_1SBS2,586,7542,084,981981,34932,77010M3418SRX708789
Ear2_Control homozygous mop1 wild-type, mop1_control_ear_pair_2SBS15,974,94812,857,8634,047,529237,34610M3418SRX708790



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50