Arabidopsis Small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
control_Col control_(Col)SBS14,530,741426,67082,627261,03910M3410SRR1312894
control_Col_rep1 control_(Col)_rep1SBS29,991,5442,753,5421,058,81422,853,17310M3410SRR1312896
control_Col_rep2 control_(Col)_rep2SBS9,141,461930,124393,8716,913,23810M3410SRR1312897
control_Col_rep3 control_(Col)_rep3SBS27,357,4542,138,575833,99621,164,27610M3410SRR1312888
Col_sdn_1 Col_seedlings_rep1SBS30,131,63410,616,6492,431,47115,721,13810M3410SRR3214216
Col__sdn_2 Col_seedlings_rep2SBS25,612,8318,576,3692,276,40413,925,79910M3410SRR3214217
AGO10_OE_rep1 AGO10_OE_rep1SBS22,795,4702,136,506646,22317,550,73810M3410SRR1312898
AGO10_OE_rep2 AGO10_OE_rep2SBS30,092,8072,314,992846,55921,910,94110M3410SRR1312899
AGO10_OE_rep3 AGO10_OE_rep3SBS10,551,4791,082,759480,4787,959,79510M3410SRR1312900
AGO10_OE_rep4 AGO10_OE_rep1SBS12,919,3371,414,955631,4727,165,12610M3410SRR1312902
AGO10_OE_flower AGO10_OE_rep2SBS14,499,1974,916,4401,716,6527,038,36310M3410SRR1312904
IPGFP_AGO10_OE_1 IPGFP_AGO10_OE_rep1SBS37,838,1391,229,197261,19331,559,87210M3410SRR1312891
IPGFP_AGO10_OE_2 IPGFP_AGO10_OE_rep2SBS27,208,5009,123,276499,59312,713,14610M3410SRR1312892
IPGFP_AGO10_OE_3 IPGFP_AGO10_OE_rep3SBS10,516,4706,128,888275,9812,826,76310M3410SRR1312893
IP_AGO10_OE_rep1 IP_AGO10_OE_rep1SBS38,865,80821,707,819986,7788,507,81110M3410SRR1312887
IP_AGO10_OE_rep2 IP_AGO10_OE_rep2SBS34,337,44920,958,9301,405,7675,000,56510M3410SRR1312889
IP_AGO10_OE_rep3 IP_AGO10_OE_rep3SBS22,936,36515,358,075886,0161,430,35310M3410SRR1312890
IP_AGO10_OE AGO10_OESBS20,075,780564,97590,331255,45910M3410SRR1312895
AGO10_OE_4mAGO1 AGO10_OE_4mAGO1SBS13,653,5461,828,749704,95410,059,99410M3410SRR1312901
sdn1_2_AGO10OE_1 sdn1_2_AGO10_OE_rep1SBS10,990,2191,096,200437,2725,002,00910M3410SRR1312903
sdn1_2_AGO10OE_2 sdn1_2_AGO10_OE_rep2SBS17,561,7246,537,0012,072,4358,057,76110M3410SRR1312905
hen1_8_1 hen1_8_seedlings_rep1SBS11,433,1803,909,4561,661,6344,036,98810M3410SRR3214218
hen1_8_2 hen1_8_seedlings_rep2SBS11,717,8164,844,0441,820,6882,252,82910M3410SRR3214219
hen1_8_sdn1_2_1 hen1_8_sdn1_1_sdn2_1_Rep1SBS6,912,619913,345454,1355,146,50910M3410SRR3214220
hen1_8_sdn1_2_2 hen1_8_sdn1_1_sdn2_1_Rep2SBS19,693,7161,985,4321,097,70615,822,66910M3410SRR3214221
sdn1_2_Rep1 sdn1_1_sdn2_1_Rep1SBS27,708,0539,066,1312,191,41715,955,22710M3410SRR3214222
sdn1_2_Rep2 sdn1_1_sdn2_1_Rep2SBS28,971,02713,399,4752,794,84211,883,52310M3410SRR3214223
ago10_13_Rep1 ago10_13_Rep1SBS19,124,5791,657,438683,64716,002,65410M3410SRR3214224
ago10_13_Rep2 ago10_13_Rep2SBS19,492,1451,622,380660,11516,534,42110M3410SRR3214225
ago10_13_Rep3 ago10_13_Rep3SBS19,477,5081,682,816673,24916,250,91110M3410SRR3214226
Ler_Rep1 Ler_Rep1SBS13,659,7321,007,744448,67411,240,96310M3410SRR3214227
Ler_Rep2 Ler_Rep2SBS9,129,857577,177303,5217,912,72110M3410SRR3214228
Ler_Rep3 Ler_Rep3SBS11,799,456832,611407,41410,124,02510M3410SRR3214229
pnh_2_Rep1 pnh_2_Rep1SBS16,601,3151,441,410582,79414,018,06010M3410SRR3214230
pnh_2_Rep2 pnh_2_Rep2SBS16,002,5041,448,010560,15913,259,69810M3410SRR3214231
pnh_2_Rep3 pnh_2_Rep3SBS21,048,7751,893,432732,50317,585,85510M3410SRR3214232
DBI_nrpd1a1b_inf nrpd1a1b_influorescenceSBS33,252,1565,733,9331,003,29323,989,27710M3418
DBI_WT_infl WT_influorescenceSBS31,672,17314,485,3102,282,67213,472,72610M3418
DBI_nrpd2a2b_inf nrpd2a2b_inflorescenceSBS32,521,8058,300,7481,045,85420,517,89110M3418
DBI_nrpd1b_infl nrpd1b_inflorescenceSBS36,698,98714,317,7652,503,17918,002,40810M3418
DBI_nrpd1a_infl nrpd1a_inflorescenceSBS30,154,1336,981,060921,47919,905,87910M3418
XCwt_1 WT smRNAseq rep1SBS13,497,6277,194,8691,653,5684,713,44310M4618GSM1377370
XCwt_2 WT smRNAseq rep2SBS20,333,68211,376,9352,059,5556,507,25910M4618GSM1377371
XCpd1_1 nrpd1 smRNAseq rep1SBS8,945,7332,199,896542,4205,720,90010M4618GSM1377372
XCpd1_2 nrpd1 smRNAseq rep2SBS9,799,8751,741,094465,2107,034,66210M4618GSM1377373
XCdcl3_1 dcl3 smRNAseq rep1SBS12,985,4375,765,6051,922,2104,545,82210M4618GSM1377374
XCdcl3_2 dcl3 smRNAseq rep2SBS7,867,7693,848,6941,301,3922,623,34910M4618GSM1377375
XCrdr2_1 rdr2 smRNAseq rep1SBS10,264,6871,849,690549,7347,390,95810M4618GSM1377376
XCrdr2_2 rdr2 smRNAseq rep2SBS7,855,6091,417,249362,7975,656,27010M4618GSM1377377
XCdcl234_1 dcl234 smRNAseq rep1SBS8,868,8082,437,080896,2934,620,23710M4618GSM1377378
XCdcl234_2 dcl234 smRNAseq rep2SBS12,475,2423,106,9461,094,4006,995,21910M4618GSM1377379
XCdcl234pd1_1 dcl234 nrpd1 smRNAseq rep1SBS8,914,3411,521,678431,6996,510,45810M4618GSM1377380
XCdcl234pd1_2 dcl234 nrpd1 smRNAseq rep2SBS11,297,7222,711,905600,7907,194,15810M4618GSM1377381
XCclsy1_1 classy1 smRNAseq rep1SBS9,534,4703,891,5301,245,5924,462,44010M4618GSM1377382



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".