at_sRNA_EV Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
Leaf_WT_1	Total RNA from WT Leaf Rep 1	SBS	sRNA	36,378,675	20,744,190	3,003,097	5,162,773	10M	34	10	GSM3147536
Leaf_WT_2	Total RNA from WT Leaf Rep 2	SBS	sRNA	12,686,960	5,884,102	1,450,981	2,902,761	10M	34	10	GSM3147537
Leaf_WT_3	Total RNA from WT Leaf Rep 3	SBS	sRNA	20,029,311	9,904,198	2,173,099	5,457,869	10M	34	10	GSM3147538
Sprn_Mock_1_2_10	Apoplast RNA from WT Leaf Rep 1	SBS	sRNA	31,760,742	7,066,184	1,975,363	14,491,338	10M	34	10	GSM3147539
Sprn_Mock_2_2_10	Apoplast RNA from WT Leaf Rep 2	SBS	sRNA	18,609,692	1,211,172	617,141	10,048,993	10M	34	10	GSM3147540
Sprn_Mock_3_2_10	Apoplast RNA from WT Leaf Rep 3	SBS	sRNA	17,260,237	243,142	114,933	11,619,057	10M	34	10	GSM3147541
EV_Mock_1_2_10	EV RNA from WT Leaf Rep 1	SBS	sRNA	7,840,244	3,315,540	286,349	1,004,087	10M	34	10	GSM3147542
EV_Mock_2_2_10	EV RNA from WT Leaf Rep 2	SBS	sRNA	20,027,051	2,978,773	1,151,309	7,042,960	10M	34	10	GSM3147543
EV_Mock_3_2_10	EV RNA from WT Leaf Rep 3	SBS	sRNA	15,595,065	5,482,265	494,106	2,842,008	10M	34	10	GSM3147544
EV_27	Total RNA from dcl234 mutant leaf replicate 1	SBS	sRNA	76,359,134	28,126,879	4,063,377	19,290,344	10M	34	10	GSM3377800
EV_28	Apoplast from dcl234 mutant replicate 1	SBS	sRNA	35,184,038	1,953,853	715,886	17,836,621	10M	34	10	GSM3377802
EV_29	EVs from dcl234 mutant replicate 1	SBS	sRNA	18,283,503	4,520,821	585,609	3,172,866	10M	34	10	GSM3377804
EV_30	Total RNA from dcl234 mutant leaf replicate 2	SBS	sRNA	33,066,539	10,864,082	1,982,960	9,576,656	10M	34	10	GSM3377801
EV_31	Apoplast from dcl234 mutant replicate 2	SBS	sRNA	27,821,775	3,419,186	1,089,692	14,360,760	10M	34	10	GSM3377803
EV_32	EVs from dcl234 mutant replicate 2	SBS	sRNA	18,136,696	4,555,627	516,272	3,481,812	10M	34	10	GSM3377805
EVs_B05_Rep1	Arabidopsis sRNA in extracellular vesicles with Botrytis cinerea protoplasts rep 1	SBS	sRNA	69,479,170	3,855,095	552,407	34,405,677	10M	34	10	SRR6667528
EVs_B05_Rep2	Arabidopsis sRNA in extracellular vesicles with Botrytis cinerea protoplasts rep 2	SBS	sRNA	87,465,393	2,306,724	636,357	76,680,406	10M	34	10	SRR6667523
EVs_B05_Rep3	Arabidopsis sRNA in extracellular vesicles with Botrytis cinerea protoplasts rep 3	SBS	sRNA	30,614,170	1,169,522	202,948	27,645,444	10M	34	10	SRR6667522
EVs_MOCK_Rep1	Arabidopsis sRNA in extracellular vesicles rep 1	SBS	sRNA	76,924,542	5,586,467	608,682	43,755,353	10M	34	10	SRR6667527
EVs_MOCK_Rep2	Arabidopsis sRNA in extracellular vesicles rep 2	SBS	sRNA	77,756,584	5,882,866	760,994	64,971,467	10M	34	10	SRR6667526
EVs_MOCK_Rep3	Arabidopsis sRNA in extracellular vesicles rep 3	SBS	sRNA	55,290,337	3,146,965	123,814	49,095,678	10M	34	10	SRR6667529
TOTAL_B05_Rep3	Arabidopsis sRNA in Botrytis cinerea protoplast rep 3	SBS	sRNA	55,622,017	9,647,426	807,633	38,095,750	10M	34	10	SRR6667536
TOTAL_B05_Rep1	Arabidopsis sRNA in Botrytis cinerea protoplast rep 1	SBS	sRNA	45,654,862	7,584,531	765,038	32,589,045	10M	34	10	SRR6667520
TOTAL_B05_Rep2	Arabidopsis sRNA in Botrytis cinerea protoplast rep 2	SBS	sRNA	60,905,784	10,095,707	336,546	43,137,526	10M	34	10	SRR6667537
TOTAL_MOCK_Rep1	Arabidopsis total sRNA rep 1	SBS	sRNA	52,840,068	10,632,761	822,573	36,220,376	10M	34	10	SRR6667525
TOTAL_MOCK_Rep2	Arabidopsis total sRNA rep 2	SBS	sRNA	56,210,261	11,526,559	1,033,389	37,703,092	10M	34	10	SRR6667524
TOTAL_MOCK_Rep3	Arabidopsis total sRNA rep 3	SBS	sRNA	56,658,299	11,111,583	1,210,041	38,812,294	10M	34	10	SRR6667521

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50