Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.
Code | Title | Technology | Library Type | Total Sequences |
Genome Matched Reads* |
Distinct Genome Matched Reads* |
t/r/sn/snoRNA Matched Reads |
Norm. Base Value |
Max. Len. of Reads |
Min. Len. of Reads |
GEO Accession Number |
---|---|---|---|---|---|---|---|---|---|---|---|
Col0 | Col-0 wildtype, control for Ecker libraries (met1, rdd, ddc libraries); unopened, immature flower buds | SBS | sRNA | 2,609,196 | 2,516,337 | 976,114 | 92,817 | 1M | 28 | 18 | GSM277608 |
ddc | drm1-2 drm2-2 cmt3-11 triple mutant plants in a Col-0 background; unopened, immature flower buds | SBS | sRNA | 1,625,918 | 1,511,746 | 605,897 | 113,367 | 1M | 28 | 18 | GSM277610 |
met1 | met1-3 mutant plants in a Col-0 background; unopened, immature flower buds | SBS | sRNA | 1,694,167 | 1,506,711 | 503,581 | 187,104 | 1M | 28 | 18 | GSM277609 |
rdd | ros1-3 dml2-1 dml3-1 triple mutant plants in a Col-0 background; unopened, immature flower buds | SBS | sRNA | 4,094,754 | 3,919,462 | 1,284,034 | 173,555 | 1M | 28 | 18 | GSM277611 |
Col0b | Col-0 wildtype, control for Ecker libraries (abh1, ein5, ein5/abh1 libraries); unopened, immature flower buds | SBS | sRNA | 2,165,587 | 1,884,391 | 874,305 | 107,357 | 1M | 33 | 18 | GSM284747 |
abh11 | abh1-1 mutant plants in a Col-0 background; unopened, immature flower buds | SBS | sRNA | 2,897,083 | 2,487,091 | 1,175,115 | 143,739 | 1M | 33 | 18 | GSM284748 |
ein56 | ein5-6 mutant plants in a Col-0 background; unopened, immature flower buds | SBS | sRNA | 2,110,776 | 1,836,942 | 885,466 | 118,713 | 1M | 33 | 18 | GSM284749 |
ein56abh11 | ein5-6/abh1-1 mutant plants in a Col-0 background; unopened, immature flower buds | SBS | sRNA | 1,709,138 | 1,473,904 | 816,817 | 90,655 | 1M | 33 | 18 | GSM284750 |
SUr2a | Arabidopsis untreated rdr2 flowers - replicated run "a" | SBS | sRNA | 2,576,657 | 1,586,518 | 354,158 | 298,718 | 1M | 32 | 18 | GSM280229 |
SUr2b | Arabidopsis untreated rdr2 flowers - replicated run "b" | SBS | sRNA | 2,611,179 | 1,642,149 | 383,299 | 372,632 | 1M | 33 | 18 | GSM280230 |
SWT1 | Arabidopsis untreated wt flowers | SBS | sRNA | 1,674,296 | 1,037,336 | 492,396 | 87,092 | 1M | 32 | 18 | GSM280228 |
S234a | Arabidopsis untreated flowers, triple mutant dcl234 - replicated run "a" | SBS | sRNA | 2,641,832 | 1,647,464 | 370,548 | 312,526 | 1M | 32 | 18 | GSM280231 |
S234b | Arabidopsis untreated dcl234 flowers - replicated run "b" | SBS | sRNA | 2,251,450 | 1,337,345 | 329,125 | 289,263 | 1M | 33 | 18 | GSM280232 |
RMMT49 | Col-0 inflorescence; Slotkin et al., 2009 | SBS | sRNA | 5,280,470 | 3,200,398 | 1,419,736 | 849,052 | 1M | 31 | 18 | |
RMKS02 | ddm1 inflorescence in Col-0 background; Slotkin et al., 2009 | SBS | sRNA | 4,952,323 | 3,568,226 | 1,113,648 | 387,576 | 1M | 31 | 18 | |
RMKS01 | Col-0 pollen cells; Slotkin et al., 2009 | SBS | sRNA | 2,540,585 | 551,394 | 297,771 | 781,766 | 1M | 31 | 18 | |
RMKS03 | Col-0 sperm cells; Slotkin et al., 2009 | SBS | sRNA | 1,925,202 | 524,532 | 275,844 | 350,860 | 1M | 31 | 18 | |
RMMT10 | Col-0 callus; Tanurdzic et al., 2008 | SBS | sRNA | 4,146,450 | 811,656 | 323,035 | 1,397,991 | 1M | 32 | 18 | |
RMMT11 | Col-0 cultured cells at 4 days; Tanurdzic et al., 2008 | SBS | sRNA | 4,123,035 | 1,400,968 | 517,898 | 1,814,292 | 1M | 31 | 18 | |
RMMT05 | A. arenosa leaves | SBS | sRNA | 3,882,189 | 1,307,566 | 183,684 | 416,806 | 1M | 34 | 18 | |
RMMT12 | A. arenosa inflorescence | SBS | sRNA | 7,266,139 | 413,834 | 122,224 | 650,895 | 1M | 34 | 18 | |
MTSRNA2 | Col-0 cultured cells at 7 days; Tanurdzic et al., 2008 | SBS | sRNA | 2,863,628 | 665,270 | 237,650 | 482,762 | 1M | 34 | 18 | |
MTSRNA1 | Col-0, leaf; Tanurdzic et al., 2008 | SBS | sRNA | 2,870,734 | 926,951 | 251,560 | 507,345 | 1M | 34 | 18 | |
CxC5d | Siliques, 5 days after pollination; Col x Col, F1 hybrid. Mosher et al., 2009 | SBS | sRNA | 243,803 | 109,045 | 53,171 | 24,351 | 1M | 27 | 18 | GSM385393 |
CxL5d | Siliques, 5 days after pollination; Col x Ler, F1 hybrid. Mosher et al., 2009 | SBS | sRNA | 362,309 | 171,495 | 78,901 | 22,992 | 1M | 27 | 18 | GSM385394 |
LxL5d | Siliques, 5 days after pollination; Ler x Ler, F1 hybrid. Mosher et al., 2009 | SBS | sRNA | 349,141 | 126,810 | 58,359 | 12,751 | 1M | 27 | 18 | GSM385395 |
LxC5d | Siliques, 5 days after pollination; Ler x Col, F1 hybrid. Mosher et al., 2009 | SBS | sRNA | 552,982 | 231,363 | 92,975 | 33,191 | 1M | 27 | 18 | GSM385396 |
Cola | 135 Col-0 flowers (stage 12) none 1 | SBS | sRNA | 2,637,986 | 2,503,011 | 774,875 | 134,943 | 1M | 30 | 18 | GSM342999 |
Colb | 136 Col-0 flowers (stage 12) none 2 | SBS | sRNA | 2,454,653 | 2,361,376 | 565,659 | 93,262 | 1M | 30 | 18 | GSM343000 |
Colc | 137 Col-0 flowers (stage 12) none 3 | SBS | sRNA | 2,483,441 | 2,365,792 | 513,170 | 117,617 | 1M | 30 | 18 | GSM343001 |
ago1a | 138 ago1-25 flowers (stage 12) none 1 | SBS | sRNA | 3,526,972 | 2,999,843 | 761,821 | 527,085 | 1M | 30 | 18 | GSM343002 |
ago1b | 139 ago1-25 flowers (stage 12) none 2 | SBS | sRNA | 3,310,859 | 2,689,518 | 736,193 | 621,304 | 1M | 30 | 18 | GSM343003 |
ago1c | 140 ago1-25 flowers (stage 12) none 3 | SBS | sRNA | 2,790,847 | 2,481,621 | 799,223 | 309,194 | 1M | 30 | 18 | GSM343004 |
Col7a | 141 Col-0 whole-aerial mock 7dpi 1 | SBS | sRNA | 684,539 | 601,534 | 282,705 | 82,998 | 1M | 27 | 18 | GSM506656 |
Col7b | 142 Col-0 whole-aerial mock 7dpi 2 | SBS | sRNA | 633,127 | 540,559 | 255,371 | 92,554 | 1M | 27 | 18 | GSM506657 |
Col7c | 143 Col-0 whole-aerial mock 7dpi 3 | SBS | sRNA | 535,636 | 488,026 | 252,954 | 47,602 | 1M | 27 | 18 | GSM506658 |
Col10a | 155 Col-0 whole-aerial mock 10dpi 1 | SBS | sRNA | 676,128 | 615,198 | 218,008 | 60,916 | 1M | 27 | 18 | GSM506662 |
Col10b | 156 Col-0 whole-aerial mock 10dpi 2 | SBS | sRNA | 822,492 | 728,109 | 246,405 | 94,377 | 1M | 27 | 18 | GSM506663 |
Col10c | 157 Col-0 whole-aerial mock 10dpi 3 | SBS | sRNA | 1,975,844 | 1,759,692 | 312,485 | 216,116 | 1M | 27 | 18 | GSM506664 |
dcl17a | 161 dcl1-7 whole-aerial mock 7dpi 1 | SBS | sRNA | 701,602 | 588,211 | 334,666 | 113,385 | 1M | 27 | 18 | GSM506668 |
dcl110a | 165 dcl1-7 whole-aerial mock 10dpi 1 | SBS | sRNA | 817,766 | 666,509 | 357,756 | 151,241 | 1M | 27 | 18 | |
dcl2347a | 169 dcl234 whole-aerial mock 7dpi 1 | SBS | sRNA | 577,980 | 497,722 | 53,127 | 80,219 | 1M | 27 | 18 | |
dcl23410a | 173 dcl234 whole-aerial mock 10dpi 1 | SBS | sRNA | 919,014 | 774,845 | 67,186 | 144,122 | 1M | 27 | 18 | |
dcl17b | 162 dcl1-7 whole-aerial mock 7dpi 2 | SBS | sRNA | 834,943 | 680,358 | 371,862 | 154,569 | 1M | 27 | 18 | GSM506669 |
dcl17c | 163 dcl1-7 whole-aerial mock 7dpi 3 | SBS | sRNA | 770,214 | 595,987 | 337,376 | 174,209 | 1M | 27 | 18 | GSM506670 |
dcl110b | 179 dcl1-7 whole-aerial mock 10dpi 2 | SBS | sRNA | 785,849 | 691,969 | 370,697 | 93,873 | 1M | 27 | 18 | |
dcl110c | 180 dcl1-7 whole-aerial mock 10dpi 3 | SBS | sRNA | 880,289 | 764,810 | 427,923 | 115,465 | 1M | 27 | 18 | |
dcl2347b | 181 dcl234 whole-aerial mock 7dpi 2 | SBS | sRNA | 1,070,752 | 824,937 | 82,581 | 245,765 | 1M | 27 | 18 | |
Col7d | 182 Col-0 whole-aerial mock 7dpi 4 | SBS | sRNA | 706,832 | 584,725 | 158,326 | 121,972 | 1M | 27 | 18 | |
dcl23410b | 183 dcl234 whole-aerial mock 10dpi 2 | SBS | sRNA | 865,167 | 778,409 | 78,596 | 86,711 | 1M | 27 | 18 | |
dcl23410c | 184 dcl234 whole-aerial mock 10dpi 3 | SBS | sRNA | 1,092,353 | 852,578 | 79,412 | 239,709 | 1M | 27 | 18 | |
TuMV7dpiA | Col0 TumV treated 7dpi Replicate 1 w/o TumV tags | SBS | sRNA | 741,486 | 648,852 | 301,527 | 92,625 | 1M | 27 | 18 | GSM506659 |
TuMV7dpiB | Col0 TumV treated 7dpi Replicate 2 w/o TuMV tags | SBS | sRNA | 953,728 | 811,345 | 284,121 | 142,370 | 1M | 27 | 18 | GSM506660 |
TuMV7dpiC | Col0 TumV treated 7dpi Replicate 3 w/o TuMV tags | SBS | sRNA | 837,363 | 741,151 | 297,287 | 96,197 | 1M | 27 | 18 | GSM506661 |
TuMV10dpiA | Col0 TumV treated 10dpi Replicate 1 w/o TuMV tags | SBS | sRNA | 954,631 | 880,060 | 281,353 | 74,565 | 1M | 27 | 18 | GSM506665 |
TuMV10dpiB | Col0 TumV treated 10dpi Replicate 2 w/o TuMV tags | SBS | sRNA | 768,234 | 714,409 | 271,243 | 53,813 | 1M | 27 | 18 | GSM506666 |
TuMV10dpiC | Col0 TumV treated 10dpi Replicate 3 w/o TuMV tags | SBS | sRNA | 522,084 | 469,180 | 185,666 | 52,895 | 1M | 27 | 18 | GSM506667 |
Vector_IP | Vector control for AGO IP data, from Col-0 mixed-stage inflorescence | SBS | sRNA | 54,588,221 | 44,311,365 | 207,814 | 2,411,172 | 1M | 36 | 18 | GSM989350 |
AGO1_DDH_IP | AGO IP data for DDH mutant, Arabidopsis mixed-stage inflorescence | SBS | sRNA | 27,365,111 | 20,428,139 | 1,019,824 | 188,736 | 1M | 36 | 18 | GSM989351 |
AGO1_DAH_IP | AGO IP data for DAH mutant, Arabidopsis mixed-stage inflorescence | SBS | sRNA | 153,301,335 | 135,804,539 | 2,456,656 | 548,207 | 1M | 36 | 18 | GSM989352 |
Col_1 | "Col rep1" in Lee et al. (2012) Inflorescence of Arabidopsis Columbia (Col-0) plants, replication 1 | SBS | sRNA | 3,711,178 | 1,662,202 | 755,834 | 533,175 | 1M | 34 | 18 | GSM893112 |
Col_2 | "Col rep2" in Lee et al. (2012) Inflorescence of Arabidopsis Columbia (Col-0) plants, replication 2 | SBS | sRNA | 11,396,067 | 6,188,508 | 2,096,017 | 1,299,816 | 1M | 34 | 18 | GSM893113 |
Col_3 | "Col rep3" in Lee et al. (2012) Inflorescence of Arabidopsis Columbia (Col-0) plants, replication 3 | SBS | sRNA | 9,690,024 | 4,946,044 | 1,710,864 | 1,119,137 | 1M | 34 | 18 | GSM893114 |
nrpe_1 | "nrpe rep1" in Lee et al. (2012) Inflorescence of Arabidopsis nrpd1b-11 mutant, replication 1 | SBS | sRNA | 4,537,222 | 1,314,919 | 577,410 | 1,128,870 | 1M | 34 | 18 | GSM893115 |
nrpe_2 | "nrpe rep2" in Lee et al. (2012) Inflorescence of Arabidopsis nrpd1b-11 mutant, replication 2 | SBS | sRNA | 9,787,140 | 4,593,270 | 1,609,521 | 1,441,756 | 1M | 34 | 18 | GSM893116 |
nrpe_3 | "nrpe rep3" in Lee et al. (2012) Inflorescence of Arabidopsis nrpd1b-11 mutant, replication 3 | SBS | sRNA | 9,343,033 | 4,327,856 | 1,524,343 | 1,406,974 | 1M | 34 | 18 | GSM893117 |
FRDR2a | “rdr2” library in Lee et al. (2012) Inflorescence of Arabidopsis rdr2-1 mutant | SBS | sRNA | 9,001,733 | 4,322,052 | 172,301 | 3,664,258 | 1M | 34 | 18 | GSM893124 |
pd1_b | “nrpd1” library in Lee et al. (2012) Inflorescence of Arabidopsis nrpd1a-4 mutant | SBS | sRNA | 13,580,575 | 2,858,557 | 491,770 | 8,889,937 | 1M | 34 | 18 | GSM893123 |
edt | Wt(T+S) control in Lee et al. (2012) Inflorescence of Arabidopsis transgenic line containing “target+silencer” | SBS | sRNA | 6,670,921 | 5,106,282 | 1,348,941 | 325,833 | 1M | 34 | 18 | GSM893118 |
dms4 | "dms4-1" library in Lee et al. (2012) Inflorescence of Arabidopsis EMS mutant dms4-1 | SBS | sRNA | 5,809,235 | 4,043,549 | 1,085,912 | 549,928 | 1M | 34 | 18 | GSM893119 |
AtD1 | “drd1-1” library in Lee et al. (2012) Inflorescence of Arabidopsis EMS mutant drd1-1 | SBS | sRNA | 25,062,884 | 13,235,015 | 2,203,196 | 1,575,615 | 1M | 31 | 18 | GSM893120 |
AtS3 | “dms3-1” library in Lee et al. (2012) Inflorescence of Arabidopsis EMS mutant dms3-1 | SBS | sRNA | 29,196,142 | 16,592,069 | 2,750,627 | 1,670,143 | 1M | 31 | 18 | GSM893121 |
AtS7 | “rdm1-4” library in Lee et al. (2012) Inflorescence of Arabidopsis EMS mutant rdm1-4 | SBS | sRNA | 28,859,673 | 13,549,231 | 2,407,971 | 1,804,236 | 1M | 31 | 18 | GSM893122 |
Ath_ovule | wild type ovules of Arabidopsis | SBS | sRNA | 4,198,511 | 2,441,563 | 506,684 | 471,019 | 1M | 34 | 18 | GSM709567 |
ZhuSaltA | Salt stress library, shoots, stress: 300mM NaCl for 5 hours, 10-day-old plants | SBS | sRNA | 19,547,356 | 9,031,812 | 3,325,257 | 8,304,161 | 1M | 31 | 17 | GSM832032 |
ZhuSaltB | Col-0, shoots, stress: 300mM NaCl for 5 hours, 10-day-old plants | SBS | sRNA | 11,606,260 | 1,344,325 | 827,169 | 8,583,346 | 1M | 31 | 17 | GSM832033 |
FAta | control for rdr2 library in Lee et al. (2012), from inflorescence of Arabidopsis Columbia (Col-0) plants | SBS | sRNA | 12,155,055 | 8,671,640 | 842,107 | 1,727,629 | 1M | 34 | 18 | GSM870550 |
hen1_1b | Biological replicate, hen1-1 mutant, Ler background, inflorescence | SBS | sRNA | 18,950,822 | 5,138,589 | 1,607,916 | 3,389,379 | 1M | 31 | 18 | GSM870547 |
hen1_8_bcm | hen1-8 mutant, Col background, inflorescence | SBS | sRNA | 9,944,870 | 3,502,878 | 1,124,806 | 2,700,055 | 1M | 31 | 18 | GSM870549 |
Ler_b | Biological replicate, Landsberg erecta (Ler), wildtype, control for hen1-1b, inflorescence. | SBS | sRNA | 20,892,255 | 11,435,520 | 2,417,721 | 1,465,617 | 1M | 31 | 18 | GSM870548 |
Control_hen1 | small RNAs from AGO1 IP in hen1-8 and heso1-1/hen1-8, together with the input controls | SBS | sRNA | 25,103,758 | 441,487 | 239,494 | 17,490,369 | 1M | 34 | 15 | GSM1178870 |
Control_hen1heso | small RNAs from AGO1 IP in hen1-8 and heso1-1/hen1-8, together with the input controls | SBS | sRNA | 27,588,154 | 516,679 | 275,663 | 20,079,107 | 1M | 34 | 15 | GSM1178871 |
AGO1IP_hen1 | small RNAs from AGO1 IP in hen1-8 and heso1-1/hen1-8, together with the input controls | SBS | sRNA | 24,134,854 | 10,934,616 | 1,314,014 | 3,005,690 | 1M | 34 | 15 | GSM1178872 |
AGO1IP_hen1heso1 | small RNAs from AGO1 IP in hen1-8 and heso1-1/hen1-8, together with the input controls | SBS | sRNA | 11,156,077 | 4,961,377 | 478,839 | 2,239,829 | 1M | 34 | 15 | GSM1178873 |
hen1_2 | hen1-2 | SBS | sRNA | 34,286,095 | 3,790,976 | 951,966 | 25,530,647 | 1M | 34 | 15 | GSM1178867 |
ago1_11 | ago1-11 | SBS | sRNA | 29,458,728 | 2,832,285 | 407,685 | 24,537,872 | 1M | 34 | 15 | GSM1178866 |
wt_4_ago1 | wt_4_ago1 | SBS | sRNA | 33,184,725 | 2,813,402 | 553,815 | 27,760,555 | 1M | 34 | 15 | GSM1178869 |
hen1_ago1_db | hen1_ago1_db | SBS | sRNA | 29,734,001 | 2,025,746 | 457,777 | 25,383,821 | 1M | 34 | 15 | GSM1178868 |
JZ_Ler_rep1 | Arabidopsis Ler wildtype, control for hen1-1 rep1 | SBS | sRNA | 2,374,442 | 407,570 | 166,229 | 547,658 | 1M | 46 | 15 | GSM1178874 |
JZ_Ler_rep2 | Arabidopsis Ler wildtype, control for hen1-1 rep2 | SBS | sRNA | 5,321,574 | 829,947 | 311,969 | 1,387,385 | 1M | 46 | 15 | GSM1178875 |
JZ_Ler_rep3 | Arabidopsis Ler wildtype, control for hen1-1 rep3 | SBS | sRNA | 6,088,853 | 1,877,373 | 565,417 | 2,446,716 | 1M | 46 | 15 | GSM1178876 |
JZ_hen1_1_rep1 | Arabidopsis hen1-1 mutant rep1 | SBS | sRNA | 2,378,069 | 344,253 | 184,593 | 452,774 | 1M | 46 | 15 | GSM1178877 |
JZ_hen1_1_rep2 | Arabidopsis hen1-1 mutant rep2 | SBS | sRNA | 5,791,631 | 843,201 | 394,597 | 1,228,909 | 1M | 46 | 15 | GSM1178878 |
JZ_hen1_1_rep3 | Arabidopsis hen1-1 mutant rep3 | SBS | sRNA | 19,140,379 | 4,611,358 | 1,463,291 | 5,813,966 | 1M | 46 | 15 | GSM1178879 |
JZ_Col_rep1 | Arabidopsis Col wildtype, control for hen1-8 rep1 | SBS | sRNA | 1,928,261 | 369,206 | 183,999 | 472,011 | 1M | 46 | 15 | GSM1178880 |
JZ_Col_rep2 | Arabidopsis Col wildtype, control for hen1-8 rep2 | SBS | sRNA | 9,695,464 | 2,864,856 | 948,834 | 4,078,738 | 1M | 46 | 15 | GSM1178881 |
JZ_Col_rep3 | Arabidopsis Col wildtype, control for hen1-8 rep3 | SBS | sRNA | 2,226,455 | 700,925 | 320,426 | 986,841 | 1M | 46 | 15 | GSM1178882 |
JZ_hen1_8_rep1 | Arabidopsis hen1-8 mutant rep1 | SBS | sRNA | 4,264,177 | 898,564 | 475,595 | 579,288 | 1M | 46 | 15 | GSM1178883 |
JZ_hen1_8_rep2 | Arabidopsis hen1-8 mutant rep2 | SBS | sRNA | 23,722,486 | 9,595,050 | 2,820,199 | 5,351,895 | 1M | 46 | 15 | GSM1178884 |
JZ_hen1_8_rep3 | Arabidopsis hen1-8 mutant rep3 | SBS | sRNA | 14,077,003 | 5,583,673 | 1,911,207 | 3,267,919 | 1M | 46 | 15 | GSM1178885 |