asparagus_sRNA Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
leaf_r1	Asparagus leaf, rep1, BM14-72	SBS	sRNA	30,024,542	26,088,513	2,796,024	30M	34	18	GSM3083898
ant1_07mm_r1	Asparagus anther 0.7mm, male1, rep1, BM14-48	SBS	sRNA	44,603,029	37,868,630	5,892,561	30M	34	18	GSM3083899
ant2_11mm_r1	Asparagus anther 1.1mm, male2, rep1, BM14-50	SBS	sRNA	51,259,921	43,322,911	7,446,673	30M	34	18	GSM3083900
ant3_15mm_r1	Asparagus anther 1.5mm, male3, rep1, BM14-52	SBS	sRNA	42,990,118	36,640,992	6,555,185	30M	34	18	GSM3083901
ant4_18mm_r1	Asparagus anther 1.8mm, male4, rep1, BM14-54	SBS	sRNA	53,728,958	43,957,742	7,413,931	30M	34	18	GSM3083902
ant5_20mm_r1	Asparagus anther 2.0mm, male5, rep1, BM14-56	SBS	sRNA	30,392,916	25,408,844	3,690,972	30M	34	18	GSM3083903
pis_ma1_05mm_r1	Asparagus pistil 0.5mm, male1 rep1, BM14-58	SBS	sRNA	39,685,208	34,495,937	4,343,967	30M	34	18	GSM3083904
pis_ma2_07mm_r1	Asparagus pistil 0.7mm, male2 rep1, BM14-60	SBS	sRNA	28,875,412	24,855,771	3,889,748	30M	34	18	GSM3083905
pis_ma3_11mm_r1	Asparagus pistil 1.1mm, male3 rep1, BM14-62	SBS	sRNA	31,683,580	27,569,720	3,411,424	30M	34	18	GSM3083906
pis_ma4_15mm_r1	Asparagus pistil 1.5mm, male4, rep1, BM14-64	SBS	sRNA	30,283,321	25,730,302	3,707,582	30M	34	18	GSM3083907
pis_ma5_18mm_r1	Asparagus pistil 1.8mm, male5 rep1, BM14-66	SBS	sRNA	29,394,111	24,907,274	3,319,477	30M	34	18	GSM3083908
pis_fe1_15mm_r1	Asparagus pistil 1.5mm, female1, rep1, BM14-74	SBS	sRNA	28,794,913	24,810,666	3,503,797	30M	34	18	GSM3083909
pis_fe2_20mm_r1	Asparagus pistil 2.0mm, female2, rep1, BM14-76	SBS	sRNA	31,706,438	27,193,316	3,437,407	30M	34	18	GSM3083910
pis_fe3_28mm_r1	Asparagus pistil 2.8mm, female3, rep1, BM14-78	SBS	sRNA	28,882,041	24,124,718	3,750,182	30M	34	18	GSM3083911
pis_fe4_35mm_r1	Asparagus pistil 3.5mm, female4, rep1, BM14-80	SBS	sRNA	33,046,715	27,551,657	4,760,834	30M	34	18	GSM3083912
pis_fe5_42mm_r1	Asparagus pistil 4.2mm, female5, rep1, BM14-82	SBS	sRNA	32,476,318	27,107,252	3,298,073	30M	34	18	GSM3083913
pis_fe6_45mm_r1	Asparagus pistil 4.5mm, female6, rep1, BM14-84	SBS	sRNA	39,544,560	32,972,815	4,612,867	30M	34	18	GSM3083914
shoot_old_r1	Asparagus shoot, old spear, rep1, BM14-68	SBS	sRNA	33,829,729	28,964,356	3,122,123	30M	34	18	GSM3083915
shoot_you_r1	Asparagus shoot, young plant, rep1, BM14-70	SBS	sRNA	30,917,138	26,511,998	2,830,205	30M	34	18	GSM3083916
8A_Fs	Spears from a female plant, line 8A	SBS	sRNA	51,071,610	44,360,733	12,174,291	30M	34	18	GSM4509833
8A_Ms	Spears from a male plant, line 8A	SBS	sRNA	47,521,321	41,488,810	11,115,910	30M	34	18	GSM4509834
8A_SMs	Spears from a super male plant, line 8A	SBS	sRNA	53,130,780	46,200,334	11,821,061	30M	34	18	GSM4509835
8B_Fs	Spears from a female plant, line 8B	SBS	sRNA	49,631,096	42,784,824	9,444,900	30M	34	18	GSM4509836
8B_Ms	Spears from a male plant, line 8B	SBS	sRNA	44,181,331	37,348,791	9,728,869	30M	34	18	GSM4509837
8B_SMs	Spears from a super male plant, line 8B	SBS	sRNA	48,687,896	40,754,942	9,644,574	30M	34	18	GSM4509838
10_Fs	Spears from a female plant, line 10	SBS	sRNA	53,644,329	44,843,138	10,916,184	30M	34	18	GSM4509831
10_Ms	Spears from a male plant, line 10	SBS	sRNA	51,686,019	43,075,567	9,482,230	30M	34	18	GSM4509832
St_Aspa	Asparagus shoot	SBS	sRNA	48,684,914	39,391,821	8,431,215	30M	34	18	GSM4509845
Lf_Aspa	Asparagus leaf	SBS	sRNA	44,967,647	37,867,912	6,553,843	30M	34	18	GSM4509841
Rt_Aspa	Asparagus root	SBS	sRNA	28,265,822	15,523,055	2,844,998	30M	34	18	GSM4509844
MFE_Aspa	Asparagus male flower early stage	SBS	sRNA	40,926,331	33,278,216	8,930,719	30M	34	18	GSM4509842
MFM_Aspa	Asparagus male flower mid stage	SBS	sRNA	56,362,666	46,065,936	10,196,583	30M	34	18	GSM4509843
FeFE_Aspa	Asparagus female flower early stage	SBS	sRNA	43,941,398	35,591,895	9,263,403	30M	34	18	GSM4509839
FeFM_Aspa	Asparagus female flower mid stage	SBS	sRNA	58,262,210	48,153,235	9,493,120	30M	34	18	GSM4509840
Asp_0_5_ant_bud	Asparagus, <0.5 mm anthers (whole buds), BM14-181	SBS	sRNA	36,110,327	27,770,661	7,025,185	30M	34	18	GSM3083917
Asp_1_ant_bud	Asparagus, 0.5 - 1.0 mm anthers (whole buds), BM14-182	SBS	sRNA	31,534,472	23,349,882	5,321,753	30M	34	18	GSM3083918
Asp_1_5_ant_bud	Asparagus, 1.0 - 1.5 mm anthers (whole buds), BM14-183	SBS	sRNA	41,127,611	33,446,709	4,021,986	30M	34	18	GSM3083919
Asp_1_0_ant	Asparagus, 0.5 - 1.0 mm anthers, BM14-184	SBS	sRNA	33,450,319	26,021,039	4,071,364	30M	34	18	GSM3083920
Asp_1_5_ant	Asparagus, 1.0 - 1.5 mm anthers, BM14-185	SBS	sRNA	37,476,488	29,029,861	7,179,194	30M	34	18	GSM3083921

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".