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Annotated species Manihot esculenta Annotation built on JGI 5.0 Total number of genes 30,666
Library type small RNA Total bp in genome 532,507,280 Protein coding 30,666
Total number of libraries 5 Total chrs or contigs 12,977 Transposon related 0

The data in this site were generated as part of a collaborative project between the Meyers lab and the Fondong lab at Delaware State University, and the results are described in a manuscript in BMC Genomics.

Some data contributed by: Vincent Fondong (Delaware State University).

Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.

Basic Queries

Please enter specific information to retrieve data.
Adjust libraries/reads to display on the control panel (optional).

Protein or gene ID
Bulk Query

e.g. cassava4.1_022599m.g
Cluster or coordinate ID
Bulk Query

e.g. CASSAVA_JGI5.1.2001.500 (cluster)   CASSAVA_JGI5.1.2001.4500 (coordinate)
Sequence of small RNA read
Bulk Query
Keyword for genes/proteins or repeats

e.g. MIRNA  LTR

Query by Chromosome Position

If you know the start and/or end of your genomic region, please enter one or both coordinates here to go directly to our chromosome viewer. If you only enter one coordinate, we use a default size of 100 kb for the viewer.