Rice mRNA DGE Library Information

For general information on this dataset, please visit http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25596. You can also click on the GEO Accession Number to open the direct link to view the information about each library and download its data.

Code Title Technology Total
Sequences		 Genome
Matched
Reads		 Distinct
Genome
Matched
Reads		 Norm.
Base
Value		 GEO
Accession
Number
MC24 Leaves collected from 3 weeks old Pi9 transgenic plants 24 hours after water spray - Sequencing technical replication -1SBS12,959,18911,787,221130,0163MGSM629189
MR06 Leaves collected from 3 weeks old Pi9 transgenic plants 6 hours after rice blast (KJ201) inoculation - Sequencing technical replication -1SBS2,642,8912,410,02183,7813MGSM629190
MR12 Leaves collected from 3 weeks old Pi9 transgenic plants 12 hours after rice blast (KJ201) inoculation - Sequencing technical replication -1SBS3,827,2423,473,22594,0893MGSM629191
MR24 Leaves collected from 3 weeks old Pi9 transgenic plants 24 hours after rice blast (KJ201) inoculation - Sequencing technical replication -1SBS10,638,6289,818,213115,2563MGSM629192
MS06 Leaves collected from 3 weeks old wild type Nipponbare plants 6 hours after rice blast (KJ201) inoculation - Sequencing technical replication -1SBS2,746,8212,509,46475,2653MGSM629193
MS12 Leaves collected from 3 weeks old wild type Nipponbare plants 12 hours after rice blast (KJ201) inoculation - Sequencing technical replication -1SBS2,015,4921,833,31866,3123MGSM629194
MS24 Leaves collected from 3 weeks old wild type Nipponbare plants 24 hours after rice blast (KJ201) inoculation - Sequencing technical replication -1SBS2,923,0402,663,24791,9123MGSM629195
MS96 Leaves collected from 3 weeks old wild type Nipponbare plants 96 hours after rice blast (KJ201) inoculation- Sequencing technical replication -1SBS2,498,7902,173,42983,6043MGSM629196
NCA01 Nipponbare, 35 days Callus- Sequencing technical replication -1SBS4,798,4774,140,976108,4493MGSM629197
NCL01 2 weeks old Nipponbare plant leaves- stressed in cold for 24 hours- Sequencing technical replication -1SBS2,773,0532,214,57370,4113MGSM629198
NCL02 2 weeks old Nipponbare plant leaves- stressed in cold for 24 hours- Sequencing technical replication -2SBS4,232,5643,824,84986,8653MGSM629199
NCR01 2 weeks old Nipponbare plant roots- stressed in cold for 24 hours- Sequencing technical replication -1SBS4,897,1494,369,74692,2913MGSM629201
NDL01 2 weeks old Nipponbare plant leaves- stressed in drought for 24 hours- Sequencing technical replication -1SBS3,364,9882,815,74089,6853MGSM629202
NDL02 2 weeks old Nipponbare plant leaves- stressed in drought for 24 hours- Sequencing technical replication -2SBS4,189,1453,864,303103,3223MGSM629203
NDR01 2 weeks old Nipponbare plant roots- stressed in drought for 24 hours- Sequencing technical replication -1SBS5,102,6334,485,988110,9763MGSM629205
NGS01 Nipponbare, 3 days Germinating seed- Sequencing technical replication -1SBS4,389,0573,901,83772,4043MGSM629206
NIP01 Nipponbare, 90 days Immature Panicle- Sequencing technical replication -1SBS4,710,6684,078,030115,5913MGSM629207
NLA01 Nipponbare, 60 days Mature Leaves- Sequencing technical replication -1SBS4,964,3394,315,337104,0273MGSM629208
NPO01 Mature Pollen- Sequencing technical replication -1SBS5,160,8784,360,080116,4493MGSM629209
NSL01 2 weeks old Nipponbare plant leaves- stressed in salt for 24 hours- Sequencing technical replication -1SBS3,296,4432,771,26790,3583MGSM629210
NSL02 2 weeks old Nipponbare plant leaves- stressed in salt for 24 hours - Sequencing technical replication -2SBS4,532,7424,179,243107,1043MGSM629211
NSR01 2 weeks old Nipponbare plant roots- stressed in salt for 24 hours- Sequencing technical replication -1SBS3,824,4713,369,74296,8923MGSM629213
NST01 Nipponbare, 60 days Stem- Sequencing technical replication -1SBS4,201,4243,604,107104,3913MGSM629214
NYL01 2 weeks old Nipponbare plant leaves-untreated control-Sequencing technical replication -1SBS2,747,8412,157,39971,4503MGSM629215
NYL02 2 weeks old Nipponbare plant leaves-untreated control- Sequencing technical replication -2SBS4,033,1373,619,48287,4653MGSM629216
NYR01 2 weeks old Nipponbare plant roots-untreated control- Sequencing technical replication -1SBS5,070,9774,591,103105,6083MGSM629218
PLA01 Beet armyworm (Spodoptera exigua) damaged 2 months old Nipponbare leaves 24 hours after infestation- Sequencing technical replication -1- sequencing problemSBS991,886698,17110,2663MGSM629219
PLA02 Beet armyworm (Spodoptera exigua) damaged 2 months old Nipponbare leaves 24 hours after infestation- Sequencing technical replication -2- sequencing problemSBS2,320,1321,743,81111,7663MGSM629220
PLC01 Nipponbare control leaves 24 hour after mechanical damage - Sequencing technical replication -1- sequencing problemSBS623,460432,0557,3123MGSM629221
PLC02 Nipponbare control leaves 24 hour after mechanical damage - Sequencing technical replication -2- sequencing problemSBS1,917,2181,409,1708,2143MGSM629222
PLW01 Rice water weevil (Lissorhoptrus oryzophilus) damaged 2 months old Nipponbare leaves 24 hours after infestation- Sequencing technical replication -1SBS2,163,1931,785,57226,7953MGSM629223
PLW02 Rice water weevil (Lissorhoptrus oryzophilus) damaged 2 months old Nipponbare leaves 24 hours after infestation- Sequencing technical replication -2SBS3,051,0052,633,27826,8233MGSM629224
PSC01 6 days old developing seeds were harvested from high milling quality cultivar - Cypress- Sequencing technical replication -1SBS3,718,4643,117,71622,6183MGSM629225
PSI01 6 days old developing seeds were harvested from high taste quality cultivar, Ilpumbyeo - Sequencing technical replication -1SBS2,210,7041,702,94519,6823MGSM629226
PSI02 6 days old developing seeds were harvested from high taste quality cultivar, Ilpumbyeo - Sequencing technical replication -2SBS3,293,3942,721,31219,8463MGSM629227
PSL01 6 days old developing seeds were harvested from low milling quality cultivar, LaGrue - Sequencing technical replication -1SBS2,326,6631,673,71617,3533MGSM629228
PSL02 6 days old developing seeds were harvested from low milling quality cultivar, LaGrue - Sequencing technical replication -2SBS3,320,1612,700,17118,1303MGSM629229
PSN01 6 days old developing seeds were harvested from Nipponbare cultivar-control- Sequencing technical replication -1SBS3,420,8792,807,33028,0713MGSM629230
PSN02 6 days old developing seeds were harvested from Nipponbare cultivar-control- Sequencing technical replication -2SBS4,110,2413,646,22827,8143MGSM629231
PSY01 6 days old developing seeds were harvested from low taste quality cultivar, YRK- Sequencing technical replication -1SBS1,044,376745,46314,9213MGSM629232
PSY02 6 days old developing seeds were harvested from low taste quality cultivar- YRK- Sequencing technical replication -2SBS2,634,7912,258,61218,1083MGSM629233
NSO01 Nipponbare Mature Stigma and Ovary- Sequencing technical replication -1SBS3,581,1262,912,83467,3693MGSM629234
NMR01 Nipponbare, 60 days Mature Roots- Sequencing technical replication -1SBS4,373,2333,774,13383,3313MGSM629235