spirodela_sRNA Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
SpoC1	Spirodela polyrhiza cold treatment overnight 0*C-1 sRNA	SOLiD	sRNA	340,135	222,120	19,428	118,015	3M	26	16	SAMN09281479
SpoC2	Spirodela polyrhiza cold treatment overnight 0*C-2 sRNA	SOLiD	sRNA	1,192,666	334,269	22,302	858,397	3M	26	16	SAMN09281480
SpoC3	Spirodela polyrhiza cold treatment overnight 0*C-3 sRNA	SOLiD	sRNA	1,791,034	588,998	40,833	1,202,036	3M	26	16	SAMN09281481
SpoHot1	Spirodela polyrhiza heat treatment 37*C-1 sRNA	SOLiD	sRNA	1,606,975	1,372,135	32,180	234,840	3M	26	16	SAMN09281482
SpoHot2	Spirodela polyrhiza heat treatment 37*C-2 sRNA	SOLiD	sRNA	1,281,120	1,114,713	22,222	166,407	3M	26	16	SAMN09281483
SpoHot3	Spirodela polyrhiza heat treatment 37*C-3 sRNA	SOLiD	sRNA	1,139,829	960,245	26,616	179,584	3M	26	16	SAMN09281484
SpoABA1	Spirodeal polyrhiza abscisic acid -1 sRNA	SOLiD	sRNA	1,989,611	1,573,196	46,179	416,415	3M	26	16	SAMN09281485
SpoABA2	Spirodeal polyrhiza abscisic acid -2 sRNA	SOLiD	sRNA	344,840	184,334	18,632	160,506	3M	26	16	SAMN09281486
SpoABA3	Spirodeal polyrhiza abscisic acid -3 sRNA	SOLiD	sRNA	3,655,819	1,344,388	53,552	2,311,431	3M	26	16	SAMN09281487
SpoCtrl1	Spirodela polyrhiza control condition-1 sRNA	SOLiD	sRNA	380,928	209,407	15,529	170,974	3M	26	16	SAMN09281476
SpoCtrl2	Spirodela polyrhiza control condition-2 sRNA	SOLiD	sRNA	759,601	310,361	21,775	449,240	3M	26	16	SAMN09281477
SpoCtrl3	Spirodela polyrhiza control condition-3 sRNA	SOLiD	sRNA	83,224	43,825	4,585	39,399	3M	26	16	SAMN09281478
SpoCu1	Spirodela polyrhiza copper chloride 4 days -1 sRNA	SOLiD	sRNA	1,064,223	966,892	14,270	97,331	3M	26	16	SAMN09281488
SpoCu2	Spirodela polyrhiza copper chloride 4 days -2 sRNA	SOLiD	sRNA	1,794,295	727,994	49,398	1,066,301	3M	26	16	SAMN09281489
SpoCu3	Spirodela polyrhiza copper chloride 4 days -1 sRNA	SOLiD	sRNA	1,248,064	314,911	33,435	933,153	3M	26	16	SAMN09281490
SpoKin1	Spirodela polyrhiza Kinetin -1 sRNA	SOLiD	sRNA	3,595,011	2,443,077	70,688	1,151,934	3M	26	16	SAMN09281491
SpoKin2	Spirodela polyrhiza Kinetin -2 sRNA	SOLiD	sRNA	1,271,825	503,459	44,314	768,366	3M	26	16	SAMN09281492
SpoKin3	Spirodela polyrhiza Kinetin -3 sRNA	SOLiD	sRNA	700,487	452,498	20,188	247,989	3M	26	16	SAMN09281493
SpoNO1	Spirodela polyrhiza nitrate -1 sRNA	SOLiD	sRNA	2,826,351	2,065,455	50,719	760,896	3M	26	16	SAMN09281494
SpoNO2	Spirodela polyrhiza nitrate -2 sRNA	SOLiD	sRNA	2,051,862	1,156,741	46,754	895,121	3M	26	16	SAMN09281495
SpoNO3	Spirodela polyrhiza nitrate -3 sRNA	SOLiD	sRNA	634,269	528,198	16,725	106,071	3M	26	16	SAMN09281496
SpoSu1	Spirodela polyrhiza sucrose -1 sRNA	SOLiD	sRNA	513,175	237,959	15,843	275,216	3M	26	16	SAMN09281497
SpoSu2	Spirodela polyrhiza sucrose -2 sRNA	SOLiD	sRNA	1,014,005	788,365	17,053	225,640	3M	26	16	SAMN09281498
SpoSu3	Spirodela polyrhiza sucrose -3 sRNA	SOLiD	sRNA	1,000,294	739,151	13,956	261,143	3M	26	16	SAMN09281499
Spirodela1	Spirodela polyrhiza, cultured fronds and roots.	SBS	sRNA	24,459,986	6,805,511	489,131	9,031,698	3M	34	18	GSM1331603
Sp_leaf	Spirodela polyrhiza leaf	SBS	sRNA	1,900,832	368,643	74,929	344,602	3M	34	18
Spiro_7498_1	Spiro 7498 rep1	SBS	sRNA	41,420,454	16,372,163	494,274	9,947,448	3M	34	18
Spiro_7498_2	Spiro 7498 rep2	SBS	sRNA	46,951,872	15,168,473	728,776	12,324,315	3M	34	18
Spiro_9509_1	Spiro 9509 rep1	SBS	sRNA	21,254,496	8,268,292	269,350	6,070,668	3M	34	18
Spiro_9509_2	Spiro 9509 rep2	SBS	sRNA	21,549,342	9,344,909	236,744	5,112,689	3M	34	18

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".