Soybean Small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
GMA01 Glycine max RootSBS3,124,6891,485,348409,106896,4621M3418GSM769282
GMA02 Glycine max NoduleSBS3,313,7261,691,489718,713759,1881M3418GSM769283
GMA03 Glycine max FlowerSBS2,617,0631,295,082682,173864,6411M3418GSM769284
GMA04 Glycine max Dev.SeedSBS3,409,1101,792,749819,103591,8921M3418GSM769285
GMA05b Glycine max Williams 82 uninoculated Root Hair, Rep 2SBS3,697,659649,982179,2931,228,9701M3418GSM769286
GMA06b Glycine max inoculated Root Hair, Rep 2SBS1,900,537424,800150,617634,0661M3418GSM769287
GMA07b Glycine max Williams 82 inoculated Stripped Root, Rep2SBS3,828,8841,814,945798,001747,7571M3418GSM769288
PVU01 Phaseolus vulgaris RootSBS3,741,114347,89111,887375,283500K3418GSM769289
PVU02 Phaseolus vulgaris FlowerSBS3,016,787292,96114,2751,075,278500K3418GSM769290
PVU03 Phaseolus vulgaris NoduleSBS2,534,488253,68316,348230,684500K3418GSM769291
PVU04 Phaseolus vulgaris Dev.SeedSBS1,579,278151,1966,632164,716500K3418GSM769292
AHY01 Arachis hypogaea NoduleSBS3,687,213108,79211,406495,107500K3418GSM769280
AHY02 Arachis hypogaea FlowerSBS4,265,433187,79210,904252,750500K3418GSM769281
MSDL1 Medicago truncatula SeedingSBS3,262,563932,66210,718117,523500K3318GSM769272
MYR1 Medicago truncatula RootSBS2,711,830275,1287,905203,665500K3318GSM769273
MINF Medicago truncatula FlowerSBS2,609,862153,6657,66864,093500K3318GSM769274
MND1 Medicago truncatula NoduleSBS2,272,926176,0988,302244,255500K3318GSM769275
MRG1 Medicago truncatula MycSBS2,511,177172,8987,947494,680500K3318GSM769276
MLEF Medicago truncatula LeafSBS3,084,454301,5307,95449,167500K3318GSM769277
MRMI1 Medicago truncatula Root KnotSBS3,148,639135,74210,547424,105500K3318GSM769278
MTR01 Medicago truncatula Dev.SeedSBS2,070,92792,57010,893817,344500K3418GSM769279
8hpiW82Ps 8hpi Williams 82 infected with P. sojaeSBS8,370,5232,067,083722,6514,941,5211M3018
8hpiHarPs 8hpi Harosoy infected with P, sojaeSBS8,640,3742,037,919579,4225,576,5341M3018
8hW82CT 8hpi Williams 82 controlSBS5,191,824783,231235,2913,497,3341M3018
8hHarCT 8hpi Harosoy controlSBS4,647,701461,78894,6403,467,4361M3018
WT_1 Soybean leaf WT rep1SBS15,953,0018,045,7271,151,1192,461,84010M3418GSM1973171
WT_2 Soybean leaf WT rep2SBS27,492,95114,781,5741,995,0664,520,31610M3418GSM1973172
dcl1a_1_3 Soybean leaf dcl1a rep1-1SBS15,955,2067,146,3871,142,7803,193,41710M3418GSM1973173
dcl1a_1_4 Soybean leaf dcl1a rep1-2SBS16,415,9957,698,8221,271,0203,163,76010M3418GSM1973174
dcl1a_2_5 Soybean leaf dcl1a rep2-1SBS29,182,86615,354,8842,112,4935,558,58110M3418GSM1973175
dcl1a_2_6 Soybean leaf dcl1a rep2-2SBS22,309,6749,938,9701,542,8593,822,62410M3418GSM1973176
dcl1b_1_7 Soybean leaf dcl1b rep1-1SBS41,256,00220,653,9622,313,9066,464,10110M3418GSM1973177
dcl1b_1_8 Soybean leaf dcl1b rep1-2SBS27,574,50416,247,0182,475,6155,056,82110M3418GSM1973178
dcl1a_dcl1b_9 Soybean leaf dcl1a-ho_dcl1b-hoSBS25,307,48112,172,1691,184,8924,358,53210M3418GSM1973179
dcl1a_dcl1b_10 Soybean leaf dcl1a-ho_dcl1b-heSBS33,673,69818,848,8402,497,3545,237,82110M3418GSM1973180



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".