Soybean RNA-seq Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
GloWSm Globular Stage Whole SeedSBSRNAseq81,963,04855,336,28719,999,7351,833,26525M4518GSM721725
HeWSm Heart Stage Whole SeedSBSRNAseq37,106,35629,155,25911,555,2631,174,80225M4518GSM721726
CoWSm Cotyledon Stage Whole SeedSBSRNAseq44,219,20031,091,99812,658,6101,335,10825M4518GSM721727
emsWSm Early-maturation stage, whole seedSBSRNAseq70,183,53439,713,46414,067,5999,879,97225M4518GSM721728
dWSm Dry Whole SeedSBSRNAseq35,901,01027,267,5707,969,2551,707,91925M4518GSM721729
LeaFm LeafSBSRNAseq42,136,53430,937,10912,188,8051,056,53725M4518GSM721730
RooTm RootSBSRNAseq37,552,48024,961,15310,908,937473,06125M4518GSM721731
SteMm StemsSBSRNAseq17,437,97412,546,8006,580,484493,54925M4518GSM721732
FlBm Floral BudSBSRNAseq53,479,57837,491,23013,175,896932,31925M4518GSM721733
SLm SeedlingSBSRNAseq31,397,26923,243,32310,166,5731,316,66625M4518GSM721734
Flm FlowersSBSRNAseq5,628,7043,595,8882,371,093433,38125M3636GSM4525225
YoLfm Young leafSBSRNAseq6,546,1854,909,0352,700,579225,69625M3636GSM4525226
Sd1m Seed early maturity stage 1SBSRNAseq5,844,8113,153,8891,510,0121,183,28125M3636GSM4525227
Sd2m Seed early maturity stage 2SBSRNAseq6,939,4784,581,4921,282,936680,49525M3636GSM4525228
SdCm Seed cotyledon stageSBSRNAseq2,641,0141,058,276743,791702,06325M3636GSM4525229
Pdm 1 cm podsSBSRNAseq6,155,7274,020,7332,279,713578,84025M3636GSM4525230
PdS10m pod shell 10 days after floweringSBSRNAseq5,933,7023,125,7771,769,208879,07625M3636GSM4525231
PdS14m pod shell 14 days after floweringSBSRNAseq6,427,7574,154,1512,319,124652,33125M3636GSM4525232
Nodm nodules separated from rootsSBSRNAseq8,502,8802,464,5091,221,894104,34225M5454GSM4525233
Rtm rootsSBSRNAseq7,902,7654,373,9772,477,859362,26025M5454GSM4525234
SY_mR_Ant Anthers, rep 1SBSRNAseq34,385,94225,140,1509,944,16179,48625M5118GSM4525235
SY_mR_Ovary Ovaries, rep 1SBSRNAseq39,481,20928,585,69913,217,154399,80225M5118GSM4525236
SY_mR_UOF Unopened flowers, rep 1SBSRNAseq41,109,98128,774,18513,612,1711,429,67625M5118GSM4525237
SY_mR_OF Open flowers, rep 1SBSRNAseq21,297,82315,128,0458,508,632262,14125M5118GSM4525238
soy_v3_r1 Soybean leaf V3 rep1SBSRNAseq32,569,45426,804,92613,310,61497,64725M5118GSM4525239
soy_v3_r2 Soybean leaf V3 rep2SBSRNAseq32,190,81426,418,10413,063,085145,36925M5118GSM4525240



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".