Setaria small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
leaf_Sv_r1 Setaria viridis A10, leaf, rep1, BM14-288SBSsRNA20,659,3619,740,6621,843,0693,747,95510M3418GSM4506135
leaf_Sv_r2 Setaria viridis A10, leaf, rep2, BM14-289SBSsRNA17,602,2058,247,9281,524,8762,989,18210M3418GSM4506136
wp_stage1_r1 Setaria viridis A10, whole panicle, stage 1 (1.5 cm, inside leaf sheath), rep1, BM14-291SBSsRNA23,640,45810,513,8124,089,7848,968,72610M3418GSM4506137
wp_stage1_r2 Setaria viridis A10, whole panicle, stage 1 (1.5 cm, inside leaf sheath), rep2, BM14-292SBSsRNA21,602,5579,053,9873,238,7588,255,98810M3418GSM4506138
wp_stage2_r1 Setaria viridis A10, whole panicle, stage 2 (inside leaf sheath), rep1, BM14-293SBSsRNA24,427,83814,935,8074,138,4114,892,94210M3418GSM4506139
wp_stage2_r2 Setaria viridis A10, whole panicle, stage 2 (inside leaf sheath), rep2, BM14-294SBSsRNA31,927,53914,385,9335,139,56312,239,12010M3418GSM4506140
wp_stage3_r1 Setaria viridis A10, whole panicle, stage 3 (coming out of leaf sheath), rep1, BM14-296SBSsRNA32,988,18617,894,5285,197,1479,460,84810M3418GSM4506141
wp_stage3_r2 Setaria viridis A10, whole panicle, stage 3 (coming out of leaf sheath), rep2, BM14-297SBSsRNA30,824,65116,950,8585,088,1098,326,83410M3418GSM4506142
wp_stage4_r1 Setaria viridis A10, whole panicle, stage 4 (completely out of leaf sheath), rep1, BM14-299SBSsRNA25,719,44415,618,6354,096,8314,694,31210M3418GSM4506143
wp_stage4_r2 Setaria viridis A10, whole panicle, stage 4 (completely out of leaf sheath), rep2, BM14-300SBSsRNA21,392,85013,596,1433,447,4003,098,40110M3418GSM4506144
wp_stage5_r1 Setaria viridis A10, whole panicle, stage 5 (completely out of leaf sheath, after polination), rep1, BM14-302SBSsRNA23,382,05314,597,9073,053,7063,453,32510M3418GSM4506145
wp_stage5_r2 Setaria viridis A10, whole panicle, stage 5 (completely out of leaf sheath, after polination), rep2, BM14-303SBSsRNA20,408,89710,945,8242,155,4354,148,94210M3418GSM4506146
spik_stage2_r1 Setaria viridis A10, spikelet, stage 2 (inside leaf sheath), rep1, BM14-305SBSsRNA27,167,05912,613,6462,985,7429,122,37110M3418GSM4506147
spik_stage2_r2 Setaria viridis A10, spikelet, stage 2 (inside leaf sheath), rep2, BM14-306SBSsRNA14,019,1307,494,1142,266,520722,92410M3418GSM4506148
spik_stage3_r1 Setaria viridis A10, spikelet, stage 3 (coming out of leaf sheath), rep1, BM14-307SBSsRNA27,124,81312,086,4942,872,14110,042,69710M3418GSM4506149
spik_stage3_r2 Setaria viridis A10, spikelet, stage 3 (coming out of leaf sheath), rep2, BM14-308SBSsRNA31,140,74114,237,5353,191,17011,499,31210M3418GSM4506150
spik_stage4_r1 Setaria viridis A10, spikelet, stage 4 (completely out of leaf sheath), rep1, BM14-310SBSsRNA26,645,1619,208,7612,706,60212,016,96710M3418GSM4506151
spik_stage4_r2 Setaria viridis A10, spikelet, stage 4 (completely out of leaf sheath), rep2, BM14-311SBSsRNA21,208,7198,546,8042,158,2407,862,01810M3418GSM4506152



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".