Rice Small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
SC1I seedling, control #1SBS2,472,0081,763,317721,500267,1822M3318GSM816687
SC2I seedling, control #2SBS494,459227,754158,46328,3502M3118GSM816688
SC3D seedling, control #3SBS1,842,8261,063,877570,813420,6452M3418GSM816689
SD1I seedling, drought #1SBS1,680,275982,644349,711175,0862M3318GSM816690
SD2D seedling, drought #2SBS2,235,7031,439,282615,557432,1562M3418GSM816691
SNa1I seedling, salt #1SBS1,822,602986,871330,981365,7072M3318GSM816692
SNa2D seedling, salt #2SBS2,809,0241,934,279806,954397,1402M3418GSM816693
SCd1I seedling, cold#1SBS2,705,0181,887,552882,545286,3192M3318GSM816694
SCd2D seedling, cold#2SBS2,625,8891,482,336630,382668,6352M3418GSM816695
SHt1I seedling, heat #1SBS510,137175,36297,319118,8582M3118GSM816696
SCdNa1I seedling, cold + salt #1SBS714,094493,668291,95953,1992M3118GSM816697
SHtD1I seedling, heat + drought #1SBS462,011215,05356,249102,6542M3118GSM816698
SHtNa1I seedling, heat + salt #1SBS747,077219,088110,110188,5652M3118GSM816699
S1dc1I seedling, OsDCL1 RNAi #1-1SBS419,333251,401190,81323,3572M3118GSM816700
S1dc1D seedling, OsDCL1 RNAi #1-2SBS3,332,5992,134,6621,213,681167,8052M3418GSM816701
S2dc1I seedling, OsDCL1 RNAi #2-1SBS257,241144,945107,39616,4202M3118GSM816702
S2dc1D seedling, OsDCL1 RNAi #2-2SBS3,181,9841,944,5871,101,894206,0752M3418GSM816703
RCn1I root, control for nutrient starvation #1SBS542,895194,150127,848100,1822M3118GSM816704
RCn2D root, control for nutrient starvation #2SBS5,477,0233,719,351852,989230,8382M3518GSM816705
RP1I root, - P #1SBS456,618250,283124,13385,8622M3118GSM816706
RP2D root, - P #2SBS5,833,2844,344,333852,024336,9722M3518GSM816707
RS1I root, - S #1SBS579,228306,274173,53361,9692M3118GSM816708
RS2D root, - S #2SBS5,166,1973,502,211753,398391,5982M3518GSM816709
RN1I root, - N #1SBS423,650224,994145,86461,0492M3118GSM816710
RN2D root, - N #2SBS5,724,0784,044,8141,262,220218,6972M3518GSM816711
RK1I root, - K #1SBS667,359236,303127,402106,0762M3118GSM816712
RK2D root, - K #2SBS5,704,3853,647,290748,559433,7272M3518GSM816713
RKNa1I root, - K + salt#1SBS499,838139,22476,67486,6172M3118GSM816714
RKNa2D root, - K + salt#2SBS4,508,7322,100,768528,971596,7752M3518GSM816715
RD1I root, drought#1SBS406,642128,72175,10891,2962M3118GSM816716
RD2D root, drought#2SBS2,890,472957,120298,845355,5822M3618GSM816717
ShCn1I shoot, control for nutrient starvation #1SBS736,021497,984298,67459,7762M3118GSM816718
ShCn2D shoot, control for nutrient starvation #2SBS3,141,3761,786,416684,698173,7232M3318GSM816719
ShP1I shoot, - P #1SBS736,745535,253290,66355,4802M3118GSM816720
ShP2D shoot, - P #2SBS3,051,1161,852,316559,342138,4612M3318GSM816721
ShS1I shoot, - S #1SBS541,134282,941173,032141,4002M3118GSM816722
ShS2D shoot, - S #2SBS2,942,9181,519,478675,086176,7782M3318GSM816723
ShN1I shoot, - N #1SBS923,759631,219325,24861,4342M3118GSM816724
ShN2D shoot, - N #2SBS3,209,4472,113,011477,77386,0662M3318GSM816725
ShK1I shoot, - K #1SBS634,874454,418228,20341,2852M3118GSM816726
ShK2D shoot, - K #2SBS4,053,2763,083,210839,668142,5912M3618GSM816727
ShKNa1I shoot, - K + salt#1SBS730,190525,272289,39027,4272M3118GSM816728
ShKNa2D shoot, - K + salt#2SBS2,992,0502,392,958732,32591,0872M3618GSM816729
PC1I panicle, control #1-1SBS624,250470,776352,40820,1022M3118GSM816730
PC1C panicle, control #1-2SBS4,551,7113,403,2131,949,610143,6042M3418GSM816731
PC2C panicle, control #2SBS4,444,3803,053,2751,602,493337,0092M3418GSM816732
PD1I panicle, drought #1-1SBS698,530512,838368,52430,6772M3118GSM816733
PD1C panicle, drought #1-2SBS4,430,5653,300,9671,836,337192,2072M3418GSM816734
PD2C panicle, drought #2SBS4,254,6233,134,2001,210,312315,3772M3418GSM816735
PNa1I panicle, salt #1-1SBS684,941523,609296,00937,1392M3118GSM816736
PNa1C panicle, salt #1-2SBS4,785,3583,527,5341,427,963242,0172M3418GSM816737
PNa2C panicle, salt #2SBS4,518,8153,104,0041,265,319314,8122M3418GSM816738
PCd1I panicle, cold #1SBS524,132385,139236,63835,1202M3118GSM816739
PCd2D panicle, cold #2SBS3,064,9092,156,0361,133,164120,8802M3418GSM816740
PHt1I panicle, heat#1SBS579,767403,945258,60547,3662M3118GSM816741
PCdNa1I panicle, cold + salt #1SBS464,388316,357223,99645,6522M3118GSM816742
PHtD1I panicle, heat + drought #1SBS343,530239,217175,11725,8092M3118GSM816743
PHtNa1I panicle, heat + salt #1SBS440,624292,755203,64755,0832M3118GSM816744
P1dc1I panicle, OsDCL1 RNAi #1-1SBS332,362193,891139,98717,7242M3118GSM816745
P1dc1D panicle, OsDCL1 RNAi #1-2SBS3,375,3162,236,2511,105,320188,5132M3418GSM816746
P2dc1I panicle, OsDCL1 RNAi #2-1SBS301,991164,167113,62521,2102M3118GSM816747
P2dc1D panicle, OsDCL1 RNAi #2-2SBS2,493,0821,503,561769,681176,3622M3418GSM816748
rbq Young inflorescence enclosed in sheaths, from NipponbareSBS2,650,1862,646,4611,340,4623,3371M2618GSM562947



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".