Rice Oglab Small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
GEO
Accession
Number
G1_5 Total sRNA, extract from 1-5 days grain after fertilizationSBS640,247297,825914,66421,5772MGSM278571
G6_10 Total sRNA, extract from 6-10 days grain after fertilizationSBS583,442296,983914,66433,7862MGSM278572
AGO1a_IP sRNAs from AGO1a IP, extracted from 3-week-old seedlingsSBS3,791,0133,659,58614,05014,1352MGSM455962
AGO1b_IP sRNAs from AGO1b IP, extracted from 3-week-old seedlingsSBS1,230,6681,081,1343,03779,4682MGSM455963
AGO1c_IP sRNAs from AGO1c IP, extracted from 3-week-old seedlingsSBS3,891,6873,681,96510,08735,0992MGSM455964
AGO_CT sRNA control for IP, total small RNA extracted from 3-weeks-old seedlingsSBS4,029,4622,090,379973,687276,3542MGSM455965
AGO4a_IP sRNA from AGO4a IP, extracted from 3-week-old seedlingsSBS3,084,4101,320,429694,96116,6382MGSM520634
AGO4b_IP sRNA from AGO4b IP, extracted from 3-week-old seedlingsSBS7,503,1103,178,3691,527,84538,3092MGSM520635
AGO16_IP sRNA from AGO16 IP, extracted from 3-week-old seedlingsSBS6,950,5762,233,485782,57962,6362MGSM520636
dcl1_sdl sRNA from os dcl1, extracted from 3-week-old seedlingsSBS6,919,6712,567,749982,838834,5842MGSM520637
dcl3_sdl sRNA from os dcl3, extracted from 3-week-old seedlingsSBS7,863,1943,241,998938,6691,005,9262MGSM520638
rdr2_sdl sRNA from os rdr2, extracted from 3-week-old seedlingsSBS8,823,3922,722,619372,465900,9442MGSM520639
wt_sdl sRNA from wildtype, extracted from 3-week-old seedlingsSBS7,957,2202,972,218865,634839,6152MGSM520640
Obar1 Oryza barthii (AA genome), seedling material from U. ArizonaSBS4,583,3153,072,9131,228,19699,0295M
OSAnls leaf, NipponbareSBS5,038,7032,225,755320,409115,6885M
LOgL O. glabberima leaf, sRNA librarySBS17,664,2688,571,617736,7891,685,3075M
ROgR O. glabberima roots, sRNA librarySBS16,061,4267,330,312598,5762,137,9875M
POgP O. glabberima panicle, sRNA librarySBS16,381,6119,220,2931,748,5661,220,4155M
LOsNpb Nipponbare leaf, sRNA librarySBS15,068,8565,673,061717,6891,889,6475M



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50