Rice RNA-seq Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
Number
of
Mismatch
GEO
Accession
Number
RZW0_1 RZW0; Mock inoculation, 0 hours; PiZT-Nipponbare with water treatmentSBS60,377,41149,916,97216,868,3902,083,70340M45180
RZB0_1 RZB0; Susceptible reaction, 0 hours; PiZT-Nipponbare with RB-22 infectionSBS58,819,22448,407,85714,443,3033,819,07940M45180
RNR0_1 RNR0; Control for susceptible reaction, 0 hours; Nipponbare with ROI-1 infectionSBS52,821,58645,068,37414,092,7991,044,09940M45180
RZR0_1 RZR0; Resistant reaction, 0 hours; PiZT-Nipponbare with ROI-1 infectionSBS67,226,66253,623,49418,171,3846,017,60940M45180
RZW24_1 RZW24; Mock inoculation, 24 hours; PiZT-Nipponbare with water treatmentSBS74,653,52557,302,78914,433,4667,707,77640M45180
RZB24_1 RZB24; Susceptible reaction, 24 hours; PiZT-Nipponbare with RB-22 infectionSBS23,718,6924,425,7371,449,9121,366,04540M45180
RNR24_1 RNR24; Control for susceptible reaction, 24 hours; Nipponbare with ROI-1 infectionSBS71,905,62760,854,19416,346,0521,795,42440M45180
RZR24_1 RZR24; Resistant reaction, 24 hours; PiZT-Nipponbare with ROI-1 infectionSBS4,996,2683,442,677864,152798,35740M45180
RZW48_1 RZW48; Mock inoculation, 48 hours; PiZT-Nipponbare with water treatmentSBS53,371,57047,212,15318,216,600166,52240M45180
RZB48_1 RZB48; Susceptible reaction, 48 hours; PiZT-Nipponbare with RB-22 infectionSBS49,510,69743,780,19317,055,973198,56640M45180
RNR48_1 RNR48; Control for susceptible reaction, 48 hours; Nipponbare with ROI-1 infectionSBS49,675,78044,668,90316,513,31396,62240M45180
RZR48_1 RZR48; Resistant reaction, 48 hours; PiZT-Nipponbare with ROI-1 infectionSBS56,866,95750,392,77018,992,661200,58940M45180
9LS_1 9LS-1, 93-11 control, leaf tissueSBS71,499,91856,684,32721,391,3433,346,20840M45180GSM943198
NLS_1_1 NLS-1, Nipponbare control, leaf tissueSBS74,145,27858,725,30222,689,9116,739,09040M45180GSM943197
9NLS_1_1 9NLS-1, 93-11 x Nipponbare hybrid, leaf tissueSBS74,974,23163,839,27425,638,222392,95340M45180GSM943200
N9LS_2_1 N9LS-2, Nipponbare x 93-11 hybrid, leaf tissueSBS78,561,00166,394,07526,062,761853,16740M45180GSM943199
WT2007m WT2007 wildtype leaf library from epigenome study (Stroud et al., 2013); mRNASBS38,130,42235,797,54315,207,087173,02820M50500GSM1081573
WT2011m WT2011 wildtype leaf library from epigenome study (Stroud et al., 2013); small RNASBS29,443,26727,565,28312,590,758198,46120M50500GSM1081574
T2iZ11Rm T2-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS36,860,11733,916,66314,637,218377,31620M50500GSM1081575
T2iZ11Sm T2-PiZt-11-S leaf library from epigenome study (Stroud et al., 2013); non-transgenic segregant; mRNASBS37,367,64534,856,51214,713,096329,63820M50500GSM1081576
T4iZ11Sm T4-PiZt-11-S leaf library from epigenome study (Stroud et al., 2013); non-transgenic segregant; mRNASBS31,631,50528,604,37312,460,1701,438,58520M50500GSM1081578
T4iZ11Rm T4-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS46,700,88543,963,28117,009,988670,72620M50500GSM1081577
T6iZ11Rm T6-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS46,699,76243,690,56516,934,027934,11320M50500GSM1081579
T6P9Rm T6-Pi9-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS39,036,35037,189,67214,752,185217,72620M50500GSM1081580
T6Sp1Rm T6-Spin1i-1-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS42,346,76439,826,54215,869,435481,46220M50500GSM1081581
BootPanicle5 panicle at booting stageSBS5,700,1332,266,9971,259,7691,007,7732M44182GSM417523
BootPanicle6 panicle at booting stageSBS11,486,9765,503,3912,949,7082,704,5132M44182GSM417524
BootPanicle7 panicle at booting stageSBS10,243,7934,684,4522,743,7192,344,0752M44182GSM417525
BootPanicle8 panicle at booting stageSBS17,356,28013,855,6456,916,8761,110,18110M35353GSM417526
BootPanicle9 panicle at booting stageSBS16,232,86312,922,1586,629,1791,033,87510M35353GSM417527
BootPanicle10 panicle at booting stageSBS15,519,81512,394,6566,388,039992,90910M35353GSM417528
BootPanicle11 panicle at booting stageSBS18,822,80415,067,7827,362,4591,227,70110M35353GSM417529
BootPanicle12 panicle at booting stageSBS18,790,86915,081,7247,321,8981,233,41710M35353GSM417530
BootPanicle13 panicle at booting stageSBS18,559,99014,873,2667,244,1521,220,10410M35353GSM417531
BootPanicle14 panicle at booting stageSBS19,908,21016,006,4217,620,3481,319,24810M35353GSM417532
FillingPanicle1 filling panicle RNA-Seq dataSBS5,483,536821,662438,7383,111,7322M35182GSM417539
Flowering_leaf1 flowering leaf RNA-Seq dataSBS5,334,2752,313,071446,2761,384,3312M35182GSM417538
FlowerPanicle1 flowering panicle RNA-Seq dataSBS5,064,0351,395,575388,7172,040,6202M35182GSM417537



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".