Rice RNA-seq Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
Number
of
Mismatch
GEO
Accession
Number
RZW0_1 RZW0; Mock inoculation, 0 hours; PiZT-Nipponbare with water treatmentSBS60,377,41144,891,29112,938,6771,836,15940M45180
RZB0_1 RZB0; Susceptible reaction, 0 hours; PiZT-Nipponbare with RB-22 infectionSBS58,819,22443,341,11610,908,6103,366,92740M45180
RNR0_1 RNR0; Control for susceptible reaction, 0 hours; Nipponbare with ROI-1 infectionSBS52,821,58640,208,72710,608,660904,60340M45180
RZR0_1 RZR0; Resistant reaction, 0 hours; PiZT-Nipponbare with ROI-1 infectionSBS67,226,66248,019,85713,934,5505,306,63640M45180
RZW24_1 RZW24; Mock inoculation, 24 hours; PiZT-Nipponbare with water treatmentSBS74,653,52551,528,35210,958,8206,733,31740M45180
RZB24_1 RZB24; Susceptible reaction, 24 hours; PiZT-Nipponbare with RB-22 infectionSBS23,718,6923,775,1361,124,4541,072,55640M45180
RNR24_1 RNR24; Control for susceptible reaction, 24 hours; Nipponbare with ROI-1 infectionSBS71,905,62754,834,56312,370,1811,573,45440M45180
RZR24_1 RZR24; Resistant reaction, 24 hours; PiZT-Nipponbare with ROI-1 infectionSBS4,996,2683,183,736723,844724,60040M45180
RZW48_1 RZW48; Mock inoculation, 48 hours; PiZT-Nipponbare with water treatmentSBS53,371,57042,974,43314,718,026148,69340M45180
RZB48_1 RZB48; Susceptible reaction, 48 hours; PiZT-Nipponbare with RB-22 infectionSBS49,510,69740,055,12913,924,058179,20340M45180
RNR48_1 RNR48; Control for susceptible reaction, 48 hours; Nipponbare with ROI-1 infectionSBS49,675,78040,899,65913,440,17487,15340M45180
RZR48_1 RZR48; Resistant reaction, 48 hours; PiZT-Nipponbare with ROI-1 infectionSBS56,866,95746,076,01615,404,694180,59840M45180
9LS_1 9LS-1, 93-11 control, leaf tissueSBS71,499,91847,779,39515,554,1802,932,56940M45180GSM943198
NLS_1_1 NLS-1, Nipponbare control, leaf tissueSBS74,145,27852,706,45717,644,9515,891,85240M45180GSM943197
9NLS_1_1 9NLS-1, 93-11 x Nipponbare hybrid, leaf tissueSBS74,974,23155,613,47019,155,800343,18340M45180GSM943200
N9LS_2_1 N9LS-2, Nipponbare x 93-11 hybrid, leaf tissueSBS78,561,00157,877,00219,431,850746,07140M45180GSM943199
WT2007m WT2007 wildtype leaf library from epigenome study (Stroud et al., 2013); mRNASBS38,130,42231,907,33011,707,551151,59120M50180GSM1081573
WT2011m WT2011 wildtype leaf library from epigenome study (Stroud et al., 2013); small RNASBS29,443,26724,560,4609,857,152173,86620M50180GSM1081574
T2iZ11Rm T2-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS36,860,11730,210,38111,298,228331,22120M50180GSM1081575
T2iZ11Sm T2-PiZt-11-S leaf library from epigenome study (Stroud et al., 2013); non-transgenic segregant; mRNASBS37,367,64531,049,15511,316,339289,02520M50180GSM1081576
T4iZ11Sm T4-PiZt-11-S leaf library from epigenome study (Stroud et al., 2013); non-transgenic segregant; mRNASBS31,631,50525,567,5059,802,9901,263,38420M50180GSM1081578
T4iZ11Rm T4-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS46,700,88540,045,24413,618,689597,89720M50180GSM1081577
T6iZ11Rm T6-PiZt-11-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS46,699,76239,696,53113,514,455834,99520M50180GSM1081579
T6P9Rm T6-Pi9-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS39,036,35033,887,74511,909,584194,43620M50180GSM1081580
T6Sp1Rm T6-Spin1i-1-R leaf library from epigenome study (Stroud et al., 2013); mRNASBS42,346,76436,275,38612,775,602430,01420M50180GSM1081581
BootPanicle5 panicle at booting stageSBS5,700,1331,146,447712,755737,2422M50182GSM417523
BootPanicle6 panicle at booting stageSBS11,486,9763,465,0391,730,4402,078,1442M50182GSM417524
BootPanicle7 panicle at booting stageSBS10,243,7932,966,3301,550,1821,722,5752M50182GSM417525
BootPanicle8 panicle at booting stageSBS17,356,28011,180,8185,015,822969,36910M35353GSM417526
BootPanicle9 panicle at booting stageSBS16,232,86310,350,1984,759,002894,12210M35353GSM417527
BootPanicle10 panicle at booting stageSBS15,519,8159,994,8114,653,174867,62510M35353GSM417528
BootPanicle11 panicle at booting stageSBS18,822,80412,193,5355,342,6131,075,99210M35353GSM417529
BootPanicle12 panicle at booting stageSBS18,790,86912,256,8455,355,6491,086,83210M35353GSM417530
BootPanicle13 panicle at booting stageSBS18,559,99012,082,6865,300,1071,074,91210M35353GSM417531
BootPanicle14 panicle at booting stageSBS19,908,21013,044,0355,585,1391,167,02810M35353GSM417532
FillingPanicle1 filling panicle RNA-Seq dataSBS5,483,536547,283265,4582,190,1412M50182GSM417539
Flowering_leaf1 flowering leaf RNA-Seq dataSBS5,334,2751,629,020215,466972,0272M50182GSM417538
FlowerPanicle1 flowering panicle RNA-Seq dataSBS5,064,035923,409193,5061,448,8002M50182GSM417537



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".