mt_sRNA2 Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
1507OE	miR1507 over-expression in Medicago hairy roots	SBS	sRNA	34,628,449	11,343,941	2,450,598	16,684,876	10M	34	18	GSM3318728
1507OE_2	miR1507 over-expression in Medicago hairy roots, rep 2	SBS	sRNA	35,843,487	15,547,100	4,501,531	11,974,504	10M	34	18	GSM3318729
2109OE	miR2109 over-expression in Medicago hairy roots	SBS	sRNA	26,888,499	9,165,645	2,578,353	12,229,849	10M	34	18	GSM3318730
2109OE_2	miR2109 over-expression in Medicago hairy roots, rep 2	SBS	sRNA	15,804,279	4,985,424	1,965,901	8,040,530	10M	34	18	GSM3318731
2118aOE	miR2118a over-expression in Medicago hairy roots	SBS	sRNA	33,438,899	14,266,167	3,439,976	12,276,906	10M	34	18	GSM3318732
2118aOE_2	miR2118a over-expression in Medicago hairy roots, rep 2	SBS	sRNA	23,114,165	8,233,011	2,989,640	10,610,612	10M	34	18	GSM3318733
2118bOE	miR2118b over-expression in Medicago hairy roots	SBS	sRNA	33,449,364	9,945,580	2,552,157	17,437,530	10M	34	18	GSM3318734
2118bOE_2	miR2118b over-expression in Medicago hairy roots, rep 2	SBS	sRNA	34,798,862	12,423,382	4,165,172	15,515,466	10M	34	18	GSM3318735
2118cOE	miR2118c over-expression in Medicago hairy roots	SBS	sRNA	27,534,868	8,563,907	2,272,108	12,812,537	10M	34	18	GSM3318736
2118cOE_4	miR2118c over-expression in Medicago hairy roots, rep 4	SBS	sRNA	33,892,257	13,512,154	3,567,300	12,014,006	10M	34	18	GSM3318737
MtOE_control	Empty vector control for miRNA over-expression lines, in Medicago hairy roots	SBS	sRNA	34,254,174	12,682,008	2,691,829	15,389,223	10M	34	18	GSM3318726
MtOE_control_2	Empty vector control for miRNA over-expression lines, in Medicago hairy roots	SBS	sRNA	23,470,443	7,333,140	2,538,010	12,150,225	10M	34	18	GSM3318727
MIM1507_1	Medicago target mimic against miR1507 rep 1	SBS	sRNA	35,481,196	10,856,094	3,117,465	15,499,187	10M	34	18	GSM3318740
MIM1507_2	Medicago target mimic against miR1507 rep 2	SBS	sRNA	31,236,579	3,687,769	1,191,084	18,446,761	10M	34	18	GSM3318741
MIM2109_1	Medicago target mimic against miR2109 rep 1	SBS	sRNA	36,256,091	14,147,275	3,924,909	14,447,812	10M	34	18	GSM3318742
MIM2109_2	Medicago target mimic against miR2109 rep 2	SBS	sRNA	33,842,818	14,914,183	3,790,182	10,898,597	10M	34	18	GSM3318743
MIM2118_1	Medicago target mimic against miR2118 rep 1	SBS	sRNA	33,135,424	12,200,440	3,397,801	14,240,737	10M	34	18	GSM3318744
MIM2118_2	Medicago target mimic against miR2118 rep 2	SBS	sRNA	33,360,403	10,566,405	3,004,287	12,950,468	10M	34	18	GSM3318745
MIMall_v2_1	Medicago target mimics against miR1507, miR2109, and miR2118 version 2 rep 1	SBS	sRNA	38,847,494	14,370,971	4,125,596	15,512,741	10M	34	18	GSM3318746
MIMall_v2_2	Medicago target mimics againstmiR1507, miR2109, and miR2118 version 2 rep 2	SBS	sRNA	35,019,933	5,118,742	1,724,208	20,419,109	10M	34	18	GSM3318747
MIMck_1	Medicago target mimic control, rep 1	SBS	sRNA	33,554,861	12,566,065	3,295,568	13,940,286	10M	34	18	GSM3318738
MIMck_2	Medicago target mimic control, rep 2	SBS	sRNA	33,185,679	12,525,316	3,027,259	12,767,523	10M	34	18	GSM3318739
MLEF2	Medicago truncatula Leaf	SBS	sRNA	30,956,692	16,203,543	3,045,959	9,826,442	10M	34	18	GSM3318718
MSDL2	sRNA libraries of Medicago seedling	SBS	sRNA	23,702,413	9,860,248	1,768,193	10,625,974	10M	34	18	GSM3318720
MtWt	Control for RDR2 RNAi line, flower tissue	SBS	sRNA	48,293,306	24,371,181	3,911,864	10,949,136	10M	34	18	GSM3318721
MYR2	sRNA libraries of Medicago root grown by Sherrier lab	SBS	sRNA	23,406,379	8,202,661	2,280,514	6,587,054	10M	34	18	GSM3318719
G643815	M. truncatula roots inoculated with Glomus intraradices (3 wpi)	SBS	sRNA	7,737,088	4,122,401	2,000,840	879,744	10M	31	18	GSM643815
G643816	M. truncatula roots, uninoculated	SBS	sRNA	7,655,170	4,048,701	2,045,148	1,111,757	10M	31	18	GSM643816
14d_DeNodRoot	Medicago nodules and roots before and after NO3 treatment	SBS	sRNA	22,253,311	4,491,582	2,111,481	13,027,140	10M	34	18	GSM3318723
16d_DeNodRoot	Medicago nodules and roots before and after NO3 treatment	SBS	sRNA	11,214,258	2,053,771	959,865	6,510,529	10M	34	18	GSM3318725
14d_Nodule	Medicago nodules and roots before and after NO3 treatment	SBS	sRNA	33,000,725	10,627,034	4,014,075	11,006,159	10M	34	18	GSM3318722
16d_Nodule	Medicago nodules and roots before and after NO3 treatment	SBS	sRNA	24,992,578	6,495,713	2,461,586	8,714,042	10M	34	18	GSM3318724

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".