maize_sRNA_phas Next-Gen DB

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Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
1.0Fertile_r1	maize fertile anthers, 1.0 mm, rep 1.	SBS	sRNA	34,019,136	27,920,285	2,147,168	1,143,016	20M	34	18	GSM1262527
1.0Fertile_r2	maize fertile anthers, 1.0 mm rep 2.	SBS	sRNA	37,594,678	30,578,867	1,273,396	810,892	20M	34	18	GSM1262538
1.0Fertile_r3	maize fertile anthers, 1.0 mm, rep 3.	SBS	sRNA	29,761,645	21,291,696	3,141,626	800,165	20M	34	18	GSM1262548
1.5Fertile_r1	maize fertile anthers, 1.5 mm, rep 1.	SBS	sRNA	37,521,389	30,362,626	1,834,792	740,767	20M	34	18	GSM1262528
1.5Fertile_r2	maize fertile anthers, 1.5 mm rep 2.	SBS	sRNA	27,713,840	21,108,442	1,012,970	419,340	20M	34	18	GSM1262539
1.5Fertile_r3	maize fertile anthers, 1.5 mm, rep 3.	SBS	sRNA	26,530,207	18,193,508	2,536,523	241,731	20M	34	18	GSM1262549
2.0Fertile_r1	maize fertile anthers, 2.0 mm, rep 1.	SBS	sRNA	35,796,937	27,650,871	2,443,875	688,607	20M	34	18	GSM1262529
2.0Fertile_r2	maize fertile anthers, 2.0 mm rep 2.	SBS	sRNA	48,664,038	37,478,392	1,624,381	1,044,986	20M	34	18	GSM1262540
2.0Fertile_r3	maize fertile anthers, 2.0 mm, rep 3.	SBS	sRNA	23,136,153	17,165,579	1,817,683	335,276	20M	34	18	GSM1262550
1.0 ms23_r1	ms23 maize anthers, line 610_2 (sterile), 1.0 mm	SBS	sRNA	39,001,907	32,235,921	4,537,456	677,183	20M	34	18	GSM2415846
1.0 ms23_r2	ms23 maize anthers, line 610_16 (sterile), 1.0 mm	SBS	sRNA	39,915,743	34,161,298	3,528,981	831,982	20M	34	18	GSM2415847
1.5 ms23_r1	ms23 maize anthers, line 610_2 (sterile), 1.5 mm	SBS	sRNA	42,336,653	35,292,915	3,653,566	922,243	20M	34	18	GSM2415848
1.5 ms23_r2	ms23 maize anthers, line 610_16 (sterile), 1.5 mm	SBS	sRNA	39,239,155	32,332,916	3,872,153	860,164	20M	34	18	GSM2415849
2.0 ms23_r1	ms23 maize anthers, line 610_2 (sterile), 2.0 mm	SBS	sRNA	45,636,253	37,940,696	4,079,021	1,173,550	20M	34	18	GSM2415850
2.0 ms23_r2	ms23 maize anthers, line 610_16 (sterile), 2.0 mm	SBS	sRNA	29,803,020	24,745,208	3,055,113	741,270	20M	34	18	GSM2415851
ms32F_1_0mm_r1	ms32 fertile sibling anthers, 1.0 mm, sample ZPP109-5	SBS	sRNA	19,052,140	13,849,145	1,983,894	791,404	20M	34	18	GSM5351110
ms32F_1_0mm_r2	ms32 fertile sibling anthers, 1.0 mm, sample ZPP112-4	SBS	sRNA	19,824,024	14,547,162	2,025,763	882,096	20M	34	18	GSM5351111
ms32F_1_0mm_r3	ms32 fertile sibling anthers, 1.0 mm, sample ZPP112-8	SBS	sRNA	18,861,638	12,966,471	2,485,596	531,270	20M	34	18	GSM5351112
ms32F_1_5mm_r1	ms32 fertile sibling anthers, 1.5 mm, sample ZPP109-5	SBS	sRNA	30,864,915	19,870,439	1,970,166	557,820	20M	34	18	GSM5351113
ms32F_1_5mm_r2	ms32 fertile sibling anthers, 1.5 mm, sample ZPP111-11	SBS	sRNA	28,058,951	19,306,547	2,902,422	905,430	20M	34	18	GSM5351114
ms32F_1_5mm_r3	ms32 fertile sibling anthers, 1.5 mm, sample ZPP112-8	SBS	sRNA	27,833,221	19,082,016	2,990,661	873,217	20M	34	18	GSM5351115
ms32F_2_0mm_r1	ms32 fertile sibling anthers, 2.0 mm, sample ZPP109-5	SBS	sRNA	26,012,858	16,925,361	1,782,064	375,866	20M	34	18	GSM5351116
ms32F_2_0mm_r2	ms32 fertile sibling anthers, 2.0 mm, sample ZPP111-11	SBS	sRNA	24,458,126	16,491,835	1,403,562	411,715	20M	34	18	GSM5351117
ms32F_2_0mm_r3	ms32 fertile sibling anthers, 2.0 mm, sample ZPP112-8	SBS	sRNA	24,552,806	16,644,055	1,557,438	508,029	20M	34	18	GSM5351118
ms32_1_0mm_r1	ms32 sterile sibling anthers, 1.0 mm, sample ZPP109-6	SBS	sRNA	27,685,411	19,560,342	2,798,359	1,251,660	20M	34	18	GSM5351119
ms32_1_0mm_r2	ms32 sterile sibling anthers, 1.0 mm, sample ZPP111-3	SBS	sRNA	28,498,691	20,403,203	2,758,139	1,211,283	20M	34	18	GSM5351120
ms32_1_0mm_r3	ms32 sterile sibling anthers, 1.0 mm, sample ZPP111-5	SBS	sRNA	26,045,706	18,045,161	3,257,072	896,057	20M	34	18	GSM5351121
ms32_1_5mm_r1	ms32 sterile sibling anthers, 1.5 mm, sample ZPP109-6	SBS	sRNA	26,096,456	17,536,797	3,861,653	832,453	20M	34	18	GSM5351122
ms32_1_5mm_r2	ms32 sterile sibling anthers, 1.5 mm, sample ZPP111-5	SBS	sRNA	25,095,373	17,661,319	2,846,436	1,149,170	20M	34	18	GSM5351123
ms32_1_5mm_r3	ms32 sterile sibling anthers, 1.5 mm, sample ZPP112-5	SBS	sRNA	24,452,061	18,078,067	2,059,188	1,376,812	20M	34	18	GSM5351124
ms32_2_0mm_r1	ms32 sterile sibling anthers, 2.0 mm, sample ZPP109-4	SBS	sRNA	29,544,626	20,054,524	4,934,632	1,009,393	20M	34	18	GSM5351125
ms32_2_0mm_r2	ms32 sterile sibling anthers, 2.0 mm, sample ZPP109-6	SBS	sRNA	24,633,769	17,899,211	3,008,216	1,184,480	20M	34	18	GSM5351126
ms32_2_0mm_r3	ms32 sterile sibling anthers, 2.0 mm, sample ZPP111-5	SBS	sRNA	24,169,081	16,867,408	3,473,383	998,859	20M	34	18	GSM5351127
51ms_1_0mm_1	Maize bHLH51 CRISPR, male sterile, 1.0 mm anthers	SBS	sRNA	29,517,028	25,128,733	2,419,853	745,958	20M	34	18	GSM5351128
51ms_1_0mm_2	Maize bHLH51 CRISPR, male sterile, 1.0 mm anthers	SBS	sRNA	29,397,098	26,075,758	2,210,328	603,114	20M	34	18	GSM5351129
51ms_1_5mm_1	Maize bHLH51 CRISPR, male sterile, 1.5 mm anthers	SBS	sRNA	25,915,062	22,950,435	1,683,041	451,808	20M	34	18	GSM5351130
51ms_1_5mm_2	Maize bHLH51 CRISPR, male sterile, 1.5 mm anthers	SBS	sRNA	37,457,892	30,742,428	2,588,956	644,453	20M	34	18	GSM5351131
51ms_2_0mm_1	Maize bHLH51 CRISPR, male sterile, 2.0 mm anthers	SBS	sRNA	49,680,659	39,804,928	2,711,554	472,711	20M	34	18	GSM5351132
51ms_2_0mm_2	Maize bHLH51 CRISPR, male sterile, 2.0 mm anthers	SBS	sRNA	50,903,453	38,697,178	2,558,467	497,092	20M	34	18	GSM5351133
51ms_3_0mm_1	Maize bHLH51 CRISPR, male sterile, 3.0 mm anthers	SBS	sRNA	45,238,425	34,566,750	5,235,489	924,464	20M	34	18	GSM5351134
51ms_3_0mm_2	Maize bHLH51 CRISPR, male sterile, 3.0 mm anthers	SBS	sRNA	40,565,209	31,588,161	3,841,264	1,035,275	20M	34	18	GSM5351135
51ms_3_0mm_3	Maize bHLH51 CRISPR, male sterile, 3.0 mm anthers, rep #3	SBS	sRNA	16,211,383	13,996,716	1,008,352	322,442	20M	34	18	GSM5351136
122ms_1mm_1	Maize bHLH122 CRISPR, male sterile, 1.0 mm anthers	SBS	sRNA	40,127,551	33,345,623	4,137,354	848,808	20M	34	18	GSM5351137
122ms_1mm_2	Maize bHLH122 CRISPR, male sterile, 1.0 mm anthers	SBS	sRNA	36,001,069	28,504,196	3,944,697	776,769	20M	34	18	GSM5351138
122ms_1mm_3	Maize bHLH122 CRISPR, male sterile, 1.0 mm anthers, rep #3	SBS	sRNA	18,497,368	15,126,735	1,918,737	475,590	20M	34	18	GSM5351139
122ms_1_5mm1	Maize bHLH122 CRISPR, male sterile, 1.5 mm anthers	SBS	sRNA	35,807,243	28,635,974	3,739,015	979,427	20M	34	18	GSM5351140
122ms_1_5mm2	Maize bHLH122 CRISPR, male sterile, 1.5 mm anthers	SBS	sRNA	35,934,229	28,459,009	3,964,916	915,981	20M	34	18	GSM5351141
122ms_2mm_1	Maize bHLH122 CRISPR, male sterile, 2.0 mm anthers, rep #1	SBS	sRNA	20,527,755	15,257,357	3,671,524	435,947	20M	34	18	GSM5351142
122ms_2mm_2	Maize bHLH122 CRISPR, male sterile, 2.0 mm anthers, rep #2	SBS	sRNA	21,984,323	17,489,217	2,767,310	560,251	20M	34	18	GSM5351143
122ms_3mm_1	Maize bHLH122 CRISPR, male sterile, 3.0 mm anthers, rep #1	SBS	sRNA	19,116,265	15,014,633	2,960,979	432,059	20M	34	18	GSM5351144
122ms_3mm_2	Maize bHLH122 CRISPR, male sterile, 3.0 mm anthers, rep #2	SBS	sRNA	18,714,072	14,686,066	2,999,449	416,656	20M	34	18	GSM5351145
HiII_1_0mm_1	HiII WT siblings, fertile, 1.0 mm anthers, rep #1	SBS	sRNA	19,679,196	15,595,692	1,971,970	639,800	20M	34	18	GSM5351146
HiII_1_0mm_2	HiII WT siblings, fertile, 1.0 mm anthers, rep #2	SBS	sRNA	23,093,066	18,270,277	2,371,745	677,374	20M	34	18	GSM5351147
HiII_1_5mm_1	HiII WT siblings, fertile, 1.5 mm anthers, rep #1	SBS	sRNA	33,741,841	25,643,860	3,260,616	820,173	20M	34	18	GSM5351148
HiII_1_5mm_2	HiII WT siblings, fertile, 1.5 mm anthers, rep #2	SBS	sRNA	30,738,798	21,958,407	2,179,486	361,177	20M	34	18	GSM5351149
HiII_2_0mm_1	HiII WT siblings, fertile, 2.0 mm anthers, rep #1	SBS	sRNA	29,599,095	22,496,486	2,128,874	464,353	20M	34	18	GSM5351150
HiII_2_0mm_2	HiII WT siblings, fertile, 2.0 mm anthers, rep #2	SBS	sRNA	31,476,778	23,134,229	2,559,648	321,008	20M	34	18	GSM5351151
HiII_3_0mm_1	HiII WT siblings, fertile, 3.0 mm anthers, rep #1	SBS	sRNA	17,695,488	13,298,923	1,920,258	284,278	20M	34	18	GSM5351152
HiII_3_0mm_2	HiII WT siblings, fertile, 3.0 mm anthers, rep #2	SBS	sRNA	19,500,776	14,414,230	2,167,662	344,155	20M	34	18	GSM5351153

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50