Maize RNA-seq Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 Number
of
Mismatch		 GEO
Accession
Number
dc5F_2mm_1 dcl5, CRISPR T2, ZNN14-1, 2.0 mm anthers, -1bp/wt, fertileSBS25,852,39822,622,5309,474,171243,42720M50181GSM3466701
dc5F_2mm_2 dcl5, CRISPR T2, ZNN14-3, 2.0 mm anthers, -1bp/wt, fertile, Spike-in 1SBS22,707,55118,665,4277,495,971584,13720M50181GSM3466702
dc5_1_2mm_1 dcl5, CRISPR T2, ZNN14-5, 2.0 mm anthers, -1bp/-1bp, partial sterile, Spike-in 2SBS26,177,64421,880,8768,552,875500,84420M50181GSM3466703
dc5_1_2mm_2 dcl5, CRISPR T2, ZNN14-6, 2.0 mm anthers, -1bp/-1bp, partial sterileSBS23,154,29920,192,3949,186,98094,00720M50181GSM3466704
dc5_1_2mm_3 dcl5, CRISPR T2, ZNN15-2, 2.0 mm anthers, -1bp/-1bp, partial sterileSBS26,964,11723,157,4599,874,366371,39220M50181GSM3466705
dc5_1_2mm_4 dcl5, CRISPR T2, ZNN15-3, 2.0 mm anthers, -1bp/-1bp, partial sterileSBS26,825,34423,882,12810,156,83479,87920M50181GSM3466706
dc5_2_2mm_1 dcl5, CRISPR T2, ZNN16-2, 2.0 mm anthers, -3bp/-3bp, partial sterile, Spike-in 1SBS25,002,19721,433,3888,109,359200,08120M50181GSM3466707
dc5_2_2mm_2 dcl5, CRISPR T2, ZNN16-3, 2.0 mm anthers, -3bp/-3bp, partial sterileSBS28,568,52225,340,53710,300,77252,80320M50181GSM3466708
dc5_3_2mm_1 dcl5, CRISPR T2, ZNN27-6, 2.0 mm anthers, -12bp/-12bp, sterile, Spike-in 1SBS24,497,16518,797,1167,075,8122,081,73820M50181GSM3466709
dc5_3_2mm_2 dcl5, CRISPR T2, ZNN27-11, 2.0 mm anthers, -12bp/-12bp, sterile, Spike-in 2SBS25,494,81116,499,9276,572,6645,043,40020M50181GSM3466710
dcl5_4_2mm_1 dcl5, CRISPR T2, ZNN25-3, 2.0 mm anthers, 149bp/ 149bp, sterile, Spike-in 2SBS25,391,14120,240,7397,666,6391,020,03320M50181GSM3466711
dcl5_4_2mm_2 dcl5, CRISPR T2, ZNN27-10, 2.0 mm anthers, +149bp/ +149bp, sterileSBS22,897,34820,639,2329,201,020122,15620M50181GSM3466712
TP_dcl5_2_3a Permissive temperature condition (23C/20C) treated dcl5-1 spikelets with 3 mm anther in upper floret and 2 mm anther in lower floretSBS29,887,71923,221,9549,974,0551,258,84020M50481GSM3466713
TR_dcl5_2_3a Restrictive temperature condition (28C/22C) treated dcl5-1 spikelets with 3 mm anther in upper floret and 2 mm anther in lower floretSBS22,928,29916,330,1227,576,0161,232,20820M50481GSM3466714



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".