litchi_sRNA Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
LitchiCarpopodiu	LitchiCarpopodium	SBS	sRNA	19,708,997	13,665,212	3,458,896	10M	34	18	GSM2610273
LitchiFlower	LitchiFlower	SBS	sRNA	20,246,261	18,379,328	6,314,749	10M	34	18	GSM2610274
LitchiFruit	LitchiFruit	SBS	sRNA	18,881,200	12,409,595	3,285,723	10M	34	18	GSM2610275
LitchiLeaf	LitchiLeaf	SBS	sRNA	20,874,962	13,784,447	4,352,393	10M	34	18	GSM2610276
LitchiRoot	LitchiRoot	SBS	sRNA	20,084,539	12,566,187	4,245,805	10M	34	18	GSM2610277
LitchiStem	LitchiStem	SBS	sRNA	18,907,665	11,870,014	4,306,767	10M	34	18	GSM2610278
fFL_I_1	Female Flower Stage I bio rep 1	SBS	sRNA	47,589,102	34,902,918	11,238,746	25M	34	18	SRX4150161
fFL_I_2	Female Flower Stage I bio rep 2	SBS	sRNA	35,467,152	23,191,363	7,782,768	25M	34	18	SRX4150162
fFL_I_3	Female Flower Stage I bio rep 3	SBS	sRNA	28,893,240	22,286,246	7,788,335	25M	34	18	SRX4150163
fFL_II_1	Female Flower Stage II bio rep 1	SBS	sRNA	21,887,655	14,894,898	4,721,265	25M	34	18	SRX4150158
fFL_II_2	Female Flower Stage II bio rep 2	SBS	sRNA	23,262,370	15,211,760	5,034,413	25M	34	18	SRX4150159
fFL_II_3	Female Flower Stage II bio rep 3	SBS	sRNA	36,100,336	27,557,838	7,836,273	25M	34	18	SRX4150160
fFL_III_1	Female Flower Stage III bio rep 1	SBS	sRNA	27,273,681	20,562,686	4,266,369	25M	34	18	SRX4150155
fFL_III_2	Female Flower Stage III bio rep 2	SBS	sRNA	32,545,650	21,608,813	5,410,883	25M	34	18	SRX4150156
fFL_III_3	Female Flower Stage III bio rep 3	SBS	sRNA	27,930,572	21,388,069	4,650,946	25M	34	18	SRX4150157
mFL_I_1	Male Flower Stage I bio rep 1	SBS	sRNA	36,341,857	27,966,595	9,033,123	25M	34	18	SRX4150146
mFL_I_2	Male Flower Stage I bio rep 2	SBS	sRNA	52,338,969	36,156,888	11,668,748	25M	34	18	SRX4150148
mFL_I_3	Male Flower Stage I bio rep 3	SBS	sRNA	51,376,280	35,869,018	12,423,225	25M	34	18	SRX4150149
mFL_II_1	Male Flower Stage II bio rep 1	SBS	sRNA	28,600,099	17,331,266	4,713,147	25M	34	18	SRX4150144
mFL_II_2	Male Flower Stage II bio rep 2	SBS	sRNA	25,643,077	20,130,020	5,541,890	25M	34	18	SRX4150145
mFL_II_3	Male Flower Stage II bio rep 3	SBS	sRNA	55,002,920	37,575,002	11,502,276	25M	34	18	SRX4150147
mFL_III_1	Male Flower Stage III bio rep 1	SBS	sRNA	29,265,792	21,077,469	5,401,464	25M	34	18	SRX4150143
mFL_III_2	Male Flower Stage III bio rep 2	SBS	sRNA	43,703,686	30,012,291	9,355,448	25M	34	18	SRX4150166
mFL_III_3	Male Flower Stage III bio rep 3	SBS	sRNA	31,555,274	24,292,951	6,681,699	25M	34	18	SRX4150167
mFL_IV_1	Male Flower Stage IV bio rep 1	SBS	sRNA	23,791,465	16,497,187	1,972,993	25M	34	18	SRX4150164
mFL_IV_2	Male Flower Stage IV bio rep 2	SBS	sRNA	50,921,388	37,257,500	8,597,674	25M	34	18	SRX4150165
mFL_IV_3	Male Flower Stage IV bio rep 3	SBS	sRNA	24,006,101	18,657,838	3,513,033	25M	34	18	SRX4150170
morphoDiff_I_1	Morphological differentiation stage I bio rep 1	SBS	sRNA	37,004,459	26,979,144	8,829,970	25M	34	18	SRX4150154
morphoDiff_I_2	Morphological differentiation stage I bio rep 2	SBS	sRNA	34,021,824	26,149,280	8,127,619	25M	34	18	SRX4150173
morphoDiff_I_3	Morphological differentiation stage I bio rep 3	SBS	sRNA	28,700,227	21,642,278	7,492,888	25M	34	18	SRX4150174
morphoDiff_II_1	Morphological differentiation stage II bio rep 1	SBS	sRNA	27,467,371	21,148,634	7,795,026	25M	34	18	SRX4150171
morphoDiff_II_2	Morphological differentiation stage II bio rep 2	SBS	sRNA	24,068,697	17,881,339	6,621,678	25M	34	18	SRX4150172
morphoDiff_II_3	Morphological differentiation stage II bio rep 3	SBS	sRNA	47,612,966	37,999,826	10,843,261	25M	34	18	SRX4150178
morphoDiff_III_1	Morphological differentiation stage III bio rep 1	SBS	sRNA	28,273,236	21,906,021	7,385,125	25M	34	18	SRX4150175
morphoDiff_III_2	Morphological differentiation stage III bio rep 2	SBS	sRNA	23,443,303	19,240,818	6,796,680	25M	34	18	SRX4150176
morphoDiff_III_3	Morphological differentiation stage III bio rep 3	SBS	sRNA	24,627,347	18,448,752	6,478,174	25M	34	18	SRX4150177
morphoDiff_IV_1	Morphological differentiation stage IV bio rep 1	SBS	sRNA	61,309,337	41,791,178	11,831,205	25M	34	18	SRX4150152
morphoDiff_IV_2	Morphological differentiation stage IV bio rep 2	SBS	sRNA	52,301,310	37,368,378	7,515,068	25M	34	18	SRX4150168
morphoDiff_IV_3	Morphological differentiation stage IV bio rep 3	SBS	sRNA	25,336,702	19,366,918	6,321,930	25M	34	18	SRX4150169
morphoDiff_V_1	Morphological differentiation stage V bio rep 1	SBS	sRNA	22,335,894	17,447,215	6,587,854	25M	34	18	SRX4150150
morphoDiff_V_2	Morphological differentiation stage V bio rep 2	SBS	sRNA	40,656,741	30,883,236	10,216,228	25M	34	18	SRX4150151
morphoDiff_V_3	Morphological differentiation stage V bio rep 3	SBS	sRNA	34,592,061	26,728,404	8,877,877	25M	34	18	SRX4150153

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".