Grape Small RNA Library Information

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Code Title Technology Total
Sequences
Genome
Matched
Reads*
Distinct
Genome
Matched
Reads*
t/r/sn/snoRNA
Matched
Reads
Norm.
Base
Value
Max.
Len. of
Reads
Min.
Len. of
Reads
GEO
Accession
Number
Leaf_Y_1 Young leaf replicate 1SBS2,703,4031,847,50745,60505M3418GSM1446592
Leaf_Y_2 Young leaf replicate 2SBS10,259,5997,076,384205,22805M3418GSM1446593
Leaf_M_1 Mature leaf replicate 1SBS16,781,40710,496,403332,42305M3418GSM1446594
Leaf_M_2 Mature leaf replicate 2SBS7,571,7065,080,020114,89105M3418GSM1446595
Leaf_S_1 Senescencing leaf replicate 1SBS3,561,231961,79044,11505M3418GSM1446596
Leaf_S_2 Senescencing leaf replicate 2SBS2,325,212836,62444,71105M3418GSM1446597
Bud_AB_1 Bud after burst replicate 1SBS16,455,86411,887,356840,26705M3418GSM1446598
Bud_AB_2 Bud after burst replicate 2SBS18,178,39611,866,561593,41405M3418GSM1446599
Bud_W_1 Winter bud replicate 1SBS63,309,88229,818,8371,219,25805M3418GSM1446600
Bud_W_2 Winter bud replicate 2SBS14,378,7855,345,542238,30405M3418GSM1446601
Bud_L_1 Laten bud replicate 1SBS4,155,6962,167,221221,76805M3418GSM1446602
Bud_L_2 Laten bud replicate 2SBS9,639,9874,903,784493,31405M3418GSM1446603
Bud_B_1 Bud burst replicate 1SBS6,634,3302,816,937411,13405M3418GSM1446604
Bud_B_2 Bud burst replicate 2SBS4,928,4582,786,044321,07305M3418GSM1446605
Stem_G_1 Green Stem replicate 1SBS10,841,2835,461,486564,99905M3418GSM1446606
Stem_G_2 Green Stem replicate 2SBS9,007,7414,597,608419,10205M3418GSM1446607
Stem_W_1 Woody Stem replicate 1SBS1,446,311511,27338,49805M3418GSM1446608
Stem_W_2 Woody Stem replicate 2SBS1,846,916773,875109,11305M3418GSM1446609
Tendril_Y_1 Young Tendril replicate 1SBS5,504,2352,715,954285,21605M3418GSM1446610
Tendril_Y_2 Young Tendril replicate 2SBS4,020,7082,083,571178,30905M3418GSM1446611
Tendril_WD_1 Well developed Tendril replicate 1SBS32,098,25614,793,6601,437,85305M3418GSM1446612
Tendril_WD_2 Well developed Tendril replicate 2SBS29,829,20214,941,857795,31705M3418GSM1446613
Inf_Y_1 Young Inflorescence replicate 1SBS6,927,3494,151,269614,25705M3418GSM1446614
Inf_Y_2 Young Inflorescence replicate 2SBS1,798,2211,075,373280,72105M3418GSM1446615
Inf_WD_1 Well developed Inflorescence replicate 1SBS14,736,5348,784,4011,439,14905M3418GSM1446616
Inf_WD_2 Well developed Inflorescence replicate 2SBS12,784,2417,364,6861,245,66705M3418GSM1446617
Flower_FB_1 Flowering begins replicate 1SBS9,901,1455,039,538850,75205M3418GSM1446618
Flower_FB_2 Flowering begins replicate 2SBS10,508,1935,477,879867,52405M3418GSM1446619
Flower_F_1 Flowering replicate 1SBS7,213,8213,638,341496,05405M3418GSM1446620
Flower_F_2 Flowering replicate 2SBS4,469,4642,209,586341,59105M3418GSM1446621
Carpel_1 Pool of Carpels replicate 1SBS19,151,78112,830,932404,99605M3418GSM1446622
Carpel_2 Pool of carpels replicate 2SBS9,839,6195,854,619332,55305M3418GSM1446623
Stamen_1 Pool of stamens replicate 1SBS134,00968,93919,34105M3418GSM1446624
Stamen_2 Pool of stamens replicate 2SBS5,087,3302,642,802171,88605M3418GSM1446625
Pollen_1 Pollen replicate 1SBS16,259,8935,914,794173,80705M3418GSM1446626
Pollen_2 Pollen replicate 2SBS15,894,6235,641,490198,14505M3418GSM1446627
Berry_FS_1 Fruitset replicate 1SBS4,032,6572,041,767366,95405M3418GSM1446628
Berry_FS_2 Fruitset replicate 2SBS12,342,7027,005,0851,034,48605M3418GSM1446629
Berry_PFS_1 Post-fruit set replicate 1SBS5,194,4062,367,687263,13605M3418GSM1446630
Berry_PFS_2 Post-fruit set replicate 2SBS5,453,3673,204,290136,00505M3418GSM1446631
Berry_PV_1 Pre-veraison replicate 1SBS389,291177,34248,49805M3418GSM1446632
Berry_PV_2 Pre-veraison replicate 2SBS14,621,4267,125,979402,87205M3418GSM1446633
Berry_V_1 Veraison replicate 1SBS7,472,4583,257,214275,43205M3418GSM1446634
Berry_V_2 Veraison replicate 2SBS15,589,0038,160,504414,25005M3418GSM1446635
Berry_MR_1 Mid-ripening replicate 1SBS5,681,9542,712,130185,91805M3418GSM1446636
Berry_MR_2 Mid-ripening replicate 2SBS2,332,1351,174,58078,80205M3418GSM1446637
Berry_R_1 Ripening replicate 1SBS13,191,5735,541,863420,90005M3418GSM1446638
Berry_R_2 Ripening replicate 2SBS10,406,5194,484,614299,98905M3418GSM1446639
Berry_PHWI_1 post-harvest withering (1st month) replicate 1SBS13,443,3738,015,033183,80605M3418GSM1446640
Berry_PHWI_2 post-harvest withering (1st month) replicate 2SBS20,533,06812,821,178189,74305M3418GSM1446641
Berry_PHWII_1 Post-harvest withering (2nd month) replicate 1SBS19,029,49110,657,068299,34205M3418GSM1446642
Berry_PHWII_2 Post-harvest withering (2nd month) replicate 2SBS15,221,9317,204,637330,92205M3418GSM1446643
Berry_PHWIII_1 Post-harvest withering (3rd month) replicate 1SBS10,805,3314,924,114169,99605M3418GSM1446644
Berry_PHWIII_2 Post-harvest withering (3rd month) replicate 2SBS5,278,2992,207,471117,50105M3418GSM1446645
Rachis_FS_1 Rachis collected at fruitset replicate 1SBS3,395,3232,443,78288,32805M3418GSM1446646
Rachis_FS_2 Rachis collected at fruitset replicate 2SBS6,243,7273,342,944475,28805M3418GSM1446647
Rachis_PFS_1 Rachis collected at post-fruit set replicate 1SBS7,452,7763,518,223301,46405M3418GSM1446648
Rachis_PFS_2 Rachis collected at post-fruit set replicate 2SBS16,814,4958,111,747703,56105M3418GSM1446649
Rachis_V_1 Rachis collected at Veraison replicate 1SBS21,536,83410,439,751738,90405M3418GSM1446650
Rachis_V_2 Rachis collected at Veraison replicate 2SBS5,656,3712,272,928139,41205M3418GSM1446651
Rachis_MR_1 Rachis collected at Mid-ripening replicate 1SBS14,918,8327,098,892492,29805M3418GSM1446652
Rachis_MR_2 Rachis collected at Mid-ripening replicate 2SBS4,838,3912,106,212183,74905M3418GSM1446653
Rachis_R_1 Rachis collected at Ripening replicate 1SBS8,707,1163,918,208153,54705M3418GSM1446654
Rachis_R_2 Rachis collected at Ripening replicate 2SBS2,863,5671,204,64766,78305M3418GSM1446655
Root_1 Root collected from in vitro cultivation replicate 1SBS687,381280,39443,74305M3418GSM1446656
Root_2 Root collected from in vitro cultivation replicate 2SBS495,593230,05834,15605M3418GSM1446657
Seed_G Pool of green seeds from berries in FS, PFS, PV stagesSBS9,120,1313,944,960214,30105M3418GSM1446658
Seed_M Pool of mature seeds from berries in V, MR ,R stagesSBS15,135,9736,100,650145,54905M3418GSM1446659
Leaf_PN Pool of in vitro grown leavesSBS11,924,1568,786,0771,449,03205M3418GSM1446660
Root_PN Pool of in vitro grown rootsSBS18,401,6235,981,041479,53605M3418GSM1446661



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".