Columbine small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
A1_2mm Columbine unopened flower buds wild type 1-2mm stage_1_rep1SBSsRNA21,661,40016,753,9663,243,472246,86710M3418SRX9342812
A1_2mmd Columbine unopened flower buds wild type 1-2mm stage_1_rep2SBSsRNA29,264,43623,596,2504,479,833266,45010M3418SRX9342813
A3_5mm Columbine unopened flower buds wild type 3-5mm stage_2_rep1SBSsRNA27,582,14120,362,6793,537,437464,67110M3418SRX9342814
A3_5mmd Columbine unopened flower buds wild type 3-5mm stage_2_rep2SBSsRNA24,057,35918,509,7303,400,634289,90410M3418SRX9342815
A6_1cm Columbine unopened flower buds wild type 6-10mm stage_3_rep1SBSsRNA24,650,90119,476,2592,861,634329,28910M3418SRX9342816
A6_1cmd Columbine unopened flower buds wild type 6-10mm stage_3_rep2SBSsRNA17,177,52513,855,2032,425,887151,97510M3418SRX9342817
A1_2cm Columbine unopened flower buds wild type 1-2 cm stage_4_rep1SBSsRNA22,764,83517,788,4311,685,274363,11310M3418SRX9342818
A1_2cmd2 Columbine unopened flower buds wild type 1-2 cm stage_4_rep2SBSsRNA38,752,70431,506,5762,925,286519,79410M3418SRX9342819
L1_aco Columbine leaf tissues wild type rep1SBSsRNA4,252,8032,806,558440,912156,37310M3418SRX9342820
L2_aco Columbine leaf tissues wild type rep2SBSsRNA5,451,5694,088,461484,292203,41610M3418SRX9342821
R1_aco Columbine root tissues wild type rep1SBSsRNA4,861,0913,872,077833,06564,97110M3418SRX9342823
R2_aco Columbine root tissues wild type rep2SBSsRNA3,501,5562,747,884646,27746,78210M3418SRX9342824



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50