columbine_RNAseq Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
A12m_1	Columbine unopened flower buds wild type 1-2mm stage_1_rep1	SBS	RNAseq	25,652,921	13,032,869	4,968,873	8,811,385	20M	50	18	SRX9342831
A12m_2	Columbine unopened flower buds wild type 1-2mm stage_1_rep2	SBS	RNAseq	22,383,069	8,607,150	3,358,905	10,717,495	20M	50	18	SRX9342832
A35m_1	Columbine unopened flower buds wild type 3-5mm stage_2_rep1	SBS	RNAseq	16,980,975	13,796,439	5,275,100	112,121	20M	50	18	SRX9342834
A35m_2	Columbine unopened flower buds wild type 3-5mm stage_2_rep2	SBS	RNAseq	20,805,359	17,051,761	6,272,522	99,106	20M	50	18	SRX9342835
A61C_1	Columbine unopened flower buds wild type 6-10mm stage_3_rep1	SBS	RNAseq	19,542,251	16,232,281	4,951,539	47,175	20M	50	18	SRX9342836
A61C_2	Columbine unopened flower buds wild type 6-10mm stage_3_rep2	SBS	RNAseq	21,464,817	16,428,461	4,842,819	1,589,218	20M	50	18	SRX9342837
A12C_1	Columbine unopened flower buds wild type 1-2 cm stage_4_rep1	SBS	RNAseq	22,047,945	17,559,790	5,150,391	630,622	20M	50	18	SRX9342838
A12C_2	Columbine unopened flower buds wild type 1-2 cm stage_4_rep2	SBS	RNAseq	31,585,986	25,808,724	6,802,080	72,780	20M	50	18	SRX9342839
RL1_aco	Columbine leaf tissues wild type rep1	SBS	RNAseq	15,005,250	12,034,833	3,352,438	140,120	20M	50	18	SRX9342840
RL2_aco	Columbine leaf tissues wild type rep2	SBS	RNAseq	11,949,344	9,581,555	2,789,510	54,826	20M	50	18	SRX9342841

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".