Arabidopsis small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 GEO
Accession
Number
C0F1 Col-0, flower, untreated #1SBSsRNA6,963,7814,877,5161,373,582761,7522MGSM1087973
C0F2 Col-0, flower, untreated #2SBSsRNA4,204,4552,789,465875,584283,0512MGSM1087974
d1F1 dcl1-7, flower, untreated #1SBSsRNA6,199,6803,574,7421,227,9751,060,6702MGSM1087975
d1F2 dcl1-7, flower, untreated #2SBSsRNA5,989,1323,705,6601,236,837840,5072MGSM1087976
d234F1 dcl234, flower, untreated #1SBSsRNA3,737,6611,417,116429,8281,395,6192MGSM1087977
d234F2 dcl234, flower, untreated #2SBSsRNA6,213,4073,822,3191,015,755594,4252MGSM1087978
r2F1 rdr2, flower, untreated #1SBSsRNA5,994,4232,195,923243,1282,905,2572MGSM1087979
r2F2 rdr2, flower, untreated #2SBSsRNA5,518,0932,233,522136,6092,071,2862MGSM1087980
r2FSb rdr2, flower, submergenceSBSsRNA9,128,3885,728,276285,5852,192,4902MGSM1087981
r2FNaSb rdr2, flower, salt and submergenceSBSsRNA8,972,5325,311,047276,3022,306,7402MGSM1087982
r2FNa1 rdr2, flower, salt #1SBSsRNA5,028,0921,834,656194,2472,577,7232MGSM1087983
r2FNa2 rdr2, flower, salt #2SBSsRNA10,101,2446,081,068281,5942,826,8642MGSM1087984
r2FL rdr2, flower, coldSBSsRNA3,220,9111,145,942117,6891,343,0912MGSM1087985
r2FD rdr2, flower, droughtSBSsRNA9,605,1294,928,142272,7453,219,5392MGSM1087986
C0FCSb Col-0, flower, control for submergenceSBSsRNA12,306,0669,399,6781,850,421715,7882MGSM1087987
C0FSb Col-0, flower, submergenceSBSsRNA11,757,1319,361,0081,761,744443,8492MGSM1087988
r2SC1 rdr2, seedling, control for heat and saltSBSsRNA5,677,3803,743,34258,2561,290,7602MGSM1087989
r2SH rdr2, seedling, heatSBSsRNA4,294,0002,165,39597,1661,321,9662MGSM1087990
r2SNa1 rdr2, seedling, salt#1SBSsRNA3,839,1492,082,93012,8601,107,4192MGSM1087991
r2SC3 rdr2, seedling, control for submergene and saltSBSsRNA6,434,8823,997,922114,9561,705,2172MGSM1087992
r2SNa2 rdr2, seedling, salt#2SBSsRNA8,461,2774,617,795138,3632,639,9372MGSM1087993
r2SSb rdr2, seedling, submergenceSBSsRNA4,844,6013,278,68082,978943,4672MGSM1087994
r2SNaSb rdr2, seedling, submergence and saltSBSsRNA5,345,8683,087,21269,5201,651,4362MGSM1087995
r2SC2 rdr2, seedling, control of phosphate starvationSBSsRNA2,539,812476,10521,75282,7792MGSM1087996
r2SP rdr2, seedling, phosphate starvationSBSsRNA3,906,624976,64636,935192,4672MGSM1087997
C0RC1 Col-0, root, control for nickel stressSBSsRNA1,954,0601,249,181525,288216,9252MGSM1087998
C0RNi Col-0, root, nickel stressSBSsRNA2,064,7191,211,490451,540360,2132MGSM1087999
AtCM mixed stage inflorescence of Arabidopsis ecotype Col-0SBSsRNA26,084,30114,488,2082,248,4991,063,7152MGSM2580302
AT_Leaf Leaf wild type col0SBSsRNA21,716,6758,047,9071,653,1248,843,35510MGSM984196
At_miR1507OX_1 Medicago miR1507 overexpression in Arabidopsis rep1SBSsRNA20,548,7761,478,373550,32317,053,1381MGSM3318750
At_miR1507OX_2 Medicago miR1507 overexpression in Arabidopsis rep2SBSsRNA20,731,1561,638,916592,53517,106,3231MGSM3318751
At_miR2109OX_1 Medicago miR2109 overexpression in Arabidopsis rep1SBSsRNA22,198,4971,760,055702,11018,291,7481MGSM3318752
At_miR2109OX_2 Medicago miR2109 overexpression in Arabidopsis rep2SBSsRNA26,015,5812,446,954806,30121,134,9141MGSM3318753
At_miR2118aOX_1 Medicago miR2118a overexpression in Arabidopsis rep1SBSsRNA17,010,1081,212,493503,78214,282,0891MGSM3318754
At_miR2118aOX_2 Medicago miR2118a overexpression in Arabidopsis rep2SBSsRNA16,454,3781,258,140456,98613,707,4671MGSM3318755
At_miR2118bOX_1 Medicago miR2118b overexpression in Arabidopsis rep1SBSsRNA21,735,6772,023,619681,03517,880,2361MGSM3318756
At_miR2118bOX_2 Medicago miR2118b overexpression in Arabidopsis rep2SBSsRNA25,373,5341,733,586671,13121,300,6291MGSM3318757
At_miR2118cOX_1 Medicago miR2118c overexpression in Arabidopsis rep1SBSsRNA18,760,5461,995,522715,06815,052,4611MGSM3318758
At_miR2118cOX_2 Medicago miR2118c overexpression in Arabidopsis rep2SBSsRNA27,720,5592,496,180862,78922,722,4781MGSM3318759
At_miROX_control Empty vector control for miRNA overexpression lines in ArabidopsisSBSsRNA20,200,0881,838,508689,67516,604,9321MGSM3318748
At_miROX_ck_2 Empty vector control for miRNA overexpression lines in ArabidopsisSBSsRNA23,723,0441,804,409707,92919,826,0601MGSM3318749
hen1-8 hen1-8SBSsRNA11,605,0755,456,8312,071,8261,561,9175MGSM1502980
hen1-8 ntp2-1 hen1-8 ntp2-1SBSsRNA12,926,8536,244,4002,231,9311,560,5735MGSM1502981
hen1-8 urt1-1 hen1-8 urt1-1SBSsRNA12,009,7966,081,2922,152,3061,361,5755MGSM1502982
hen1-8 ntp4-1 hen1-8 ntp4-1SBSsRNA9,758,0764,626,8781,825,1831,329,6115MGSM1502983
hen1-8 ntp5-1 hen1-8 ntp5-1SBSsRNA12,846,8635,676,0732,056,0062,394,3225MGSM1502984
hen1-8 ntp6-1 hen1-8 ntp6-1SBSsRNA16,767,2184,328,718703,0228,565,4955MGSM1502985
hen1-8 ntp7-1 hen1-8 ntp7-1SBSsRNA9,359,5914,409,0801,792,6771,340,4155MGSM1502986
hen1-8 ntp8-1 hen1-8 ntp8-1SBSsRNA17,812,0058,736,0082,883,3811,862,6075MGSM1502987
hen1-8 ntp10-1 hen1-8 ntp10-1SBSsRNA13,706,2986,387,4592,345,9321,787,8995MGSM1502988
hen1-8 r2 hen1-8 r2SBSsRNA5,895,6512,874,2031,212,762620,3335MGSM1502989
hen1-8 heso1-1 hen1-8 heso1-1SBSsRNA9,488,3796,015,0541,947,2541,002,4385MGSM1502990
hen1-8 mee44 hen1-8 mee44SBSsRNA7,273,1353,435,0301,446,796977,2665MGSM1502991
Wt_d sRNA library constructed from Arabidopsis Col-0 unopened flower budsSBSsRNA11,808,9217,517,4502,661,2042,621,6775MGSM2580303
Col_d sRNA library from Arabidopsis wildtype Col-0 plantSBSsRNA24,688,93411,692,0992,778,9318,478,7695MGSM2580304



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".