at_RNAseq Next-Gen DB

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
m_WTc	mRNA library from Arabidopsis wildtype Col-0	SBS	RNAseq	38,004,215	32,597,532	10,299,320	325,871	25M	42	18	GSM913710
m_idn2	mRNA library from Arabidopsis mutant idn2	SBS	RNAseq	46,865,088	40,223,814	13,497,174	225,944	25M	42	18	GSM913714
m_idn2_db	mRNA library from Arabidopsis mutant idn2-like double	SBS	RNAseq	37,302,225	33,249,694	11,443,771	210,696	25M	42	18	GSM913715
m_idn2_tp	mRNA library from Arabidopsis mutant idn2-triple	SBS	RNAseq	50,837,074	45,243,533	14,001,773	238,424	25M	42	18	GSM913716
m_ago4	mRNA library from Arabidopsis mutant ago4	SBS	RNAseq	34,006,794	30,211,975	11,426,564	284,736	25M	42	18	GSM913711
m_drm1_2	mRNA library from Arabidopsis mutant drm1/drm2	SBS	RNAseq	38,260,187	34,232,909	11,592,485	682,165	25M	42	18	GSM913712
m_nrpe1	mRNA library from Arabidopsis mutant nrpe1	SBS	RNAseq	36,509,777	30,180,439	11,552,304	390,902	25M	40	18	GSM913713
JE_Wt1	Wild-type replicate 1	SBS	RNAseq	11,853,863	10,324,666	4,489,440	86,719	25M	42	40	GSM852792
JE_Wt2	Wild-type replicate 2	SBS	RNAseq	13,046,947	11,615,744	4,577,136	154,161	25M	42	40	GSM852793
JE_Wt3	Wild-type replicate 3	SBS	RNAseq	7,853,584	5,738,565	2,933,440	77,676	25M	42	41	GSM852794
fry1_6_1	fry1-6 replicate 1	SBS	RNAseq	12,667,376	11,308,923	4,988,346	178,117	25M	42	40	GSM852795
fry1_6_2	fry1-6 replicate 2	SBS	RNAseq	12,488,745	10,325,161	4,492,222	156,271	25M	42	40	GSM852796
fry1_6_3	fry1-6 replicate 3	SBS	RNAseq	9,065,436	6,506,189	3,320,654	120,021	25M	42	41	GSM852797
xrn3_3_1	xrn3-3 replicate 1	SBS	RNAseq	30,499,108	26,091,608	8,064,377	196,296	25M	50	19	GSM852798
xrn3_3_2	xrn3-3 replicate 2	SBS	RNAseq	30,959,670	26,363,914	8,052,110	183,659	25M	50	40	GSM852799
xrn2_1xrn4_6_1	xrn2-1xrn4-6 replicate 1	SBS	RNAseq	29,499,899	25,898,907	8,411,031	275,125	25M	50	41	GSM852800
xrn2_1xrn4_6_2	xrn2-1xrn4-6 replicate 2	SBS	RNAseq	28,517,837	25,296,881	8,304,914	256,271	25M	50	41	GSM852801
xrn3_3xrn4_6_1	xrn3-3xrn4-6 replicate 1	SBS	RNAseq	29,421,024	25,758,053	8,433,349	281,742	25M	50	41	GSM852802
xrn3_3xrn4_6_2	xrn3-3xrn4-6 replicate 2	SBS	RNAseq	26,454,337	23,296,851	7,920,714	360,190	25M	50	41	GSM852803
Wt_3w_1	Wild-type-3w replicate 1	SBS	RNAseq	25,004,708	21,076,986	5,908,171	215,928	25M	50	41	GSM852804
Wt_3w_2	Wild-type-3w replicate 2	SBS	RNAseq	8,157,389	7,226,088	3,090,940	142,843	25M	50	41	GSM852805
xrn2_1xrn3_3_1	xrn2-1xrn3-3 replicate 1	SBS	RNAseq	24,832,164	21,657,942	5,813,699	157,713	25M	50	41	GSM852806
xrn2_1xrn3_3_2	xrn2-1xrn3-3 replicate 2	SBS	RNAseq	29,380,391	25,225,513	6,980,919	140,827	25M	50	39	GSM852807

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".