Soybean RNA-seq - USB
Home / Basic Queries
Other Queries
miRNA Abundances
Chromosome Viewer
Bulk Loci Query
PHAS Loci
Multi-DB Query
Library Information
Analysis Apps
miRNA Tools
Resources
FAQs & Help
Publications
Links
JSON Web Services
Lists of PHAS Loci
About Us
Contact & Credits
Meyers Lab
DBs for Same Genome
PARE - USB
RNA-seq
Small RNA
Small RNA - dcl2
Small RNA - USB
DBs for Close Species
Medicago PARE
Medicago Small RNA
Medicago Small RNA - 2
Soybean RNA-seq Analysis
The basic information for the gene or region you select may be displayed below.
New Search
Control Panel
Legend
JSON Data
Library Abundances
Interactive View
Start a new gene search
Gene ID:
Model # (optional):
Padding at each end:
nt
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X
Start a new coordinate search
Chr or contig ID:
Start:
End:
Padding at each end:
nt Mark the unpadded region:
yes
no
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X
Start a new cluster search
A cluster ID is of the format 'SOY_JGI2.[chr_id].[start].[length]'.
Cluster ID:
Size (ignore the size specified in cluster ID):
250 bp
500 bp
1 kb
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X