Oglab RNA-seq
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Rice RNA-seq
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Rice Small RNA
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Rice Small RNA - 3
Rice Small RNA - 4
Rice Small RNA - ago1d
Rice MetC-seq
Obrachy PARE
Obrachy Small RNA
Rice Oglab RNA-seq Analysis
The basic information for the gene or region you select may be displayed below.
New Search
Control Panel
Legend
JSON Data
Library Abundances
Interactive View
Start a new gene search
Gene ID:
Model # (optional):
Padding at each end:
nt
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X
Start a new coordinate search
Select chromosome or contig
Chr 1 (32613412 bp)
Chr 2 (29142869 bp)
Chr 3 (33053699 bp)
Chr 4 (26299011 bp)
Chr 5 (23192814 bp)
Chr 6 (24174485 bp)
Chr 7 (21799424 bp)
Chr 8 (20292731 bp)
Chr 9 (17607432 bp)
Chr 10 (16910673 bp)
Chr 11 (20796451 bp)
Chr 12 (19154523 bp)
Unmapped BAC Regions on Chr 1 (1601743 bp)
Unmapped BAC Regions on Chr 2 (2585109 bp)
Unmapped BAC Regions on Chr 3 (2133830 bp)
Unmapped BAC Regions on Chr 4 (1831152 bp)
Unmapped BAC Regions on Chr 5 (504606 bp)
Unmapped BAC Regions on Chr 6 (4672953 bp)
Unmapped BAC Regions on Chr 7 (4119513 bp)
Unmapped BAC Regions on Chr 8 (3766399 bp)
Unmapped BAC Regions on Chr 9 (1803593 bp)
Unmapped BAC Regions on Chr 10 (1771919 bp)
Unmapped BAC Regions on Chr 11 (3326164 bp)
Unmapped BAC Regions on Chr 12 (3457510 bp)
Start:
End:
Padding at each end:
nt Mark the unpadded region:
yes
no
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X
Start a new cluster search
A cluster ID is of the format 'RICE_Oglab2_01.[chr_id].[start].[length]'.
Cluster ID:
Size (ignore the size specified in cluster ID):
250 bp
500 bp
1 kb
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X