Rice RNA-seq
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Rice RNA-seq Analysis
The basic information for the gene or region you select may be displayed below.
New Search
Control Panel
Legend
JSON Data
Library Abundances
Interactive View
Start a new gene search
Gene ID:
Model # (optional):
Padding at each end:
nt
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X
Start a new coordinate search
Select chromosome or contig
Chr 1 (43270923 bp)
Chr 2 (35937250 bp)
Chr 3 (36413819 bp)
Chr 4 (35502694 bp)
Chr 5 (29958434 bp)
Chr 6 (31248787 bp)
Chr 7 (29697621 bp)
Chr 8 (28443022 bp)
Chr 9 (23012720 bp)
Chr 10 (23207287 bp)
Chr 11 (29021106 bp)
Chr 12 (27531856 bp)
Chloroplast Genome (134525 bp)
Mitochondrial Genome (490520 bp)
Unmapped BAC Regions (633585 bp)
Syngenta Contigs (592136 bp)
Start:
End:
Padding at each end:
nt Mark the unpadded region:
yes
no
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X
Start a new cluster search
A cluster ID is of the format 'RICE_MSU7.[chr_id].[start].[length]'.
Cluster ID:
Size (ignore the size specified in cluster ID):
250 bp
500 bp
1 kb
Base pairs per pixel:
1 - Enormous
3 - Very large
5 - Optimal for printed figures
10 - Standard
15 - Narrow
20 - Very narrow
Image scaling:
None
2X
3X
6X
10X
20X