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Annotated species Zostera marina Annotation built on JGI 2.1 Total number of genes 20,859
Library type small RNA Total bp in genome 203,913,826 Protein coding 20,859
Total number of libraries 7 Total chrs or contigs 2,228 Transposon related 0

This website was set up to organize our work in a comparative analysis of monocot small RNAs, described in a paper on bioRxiv. Additional data and databases are accessible and described on our index page.

Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.

Basic Queries

Please enter specific information to retrieve data.
Adjust libraries/reads to display on the control panel (optional).

Protein or gene ID
Bulk Query

e.g. gene597
Cluster or coordinate ID
Bulk Query

e.g. ZOSTERA_JGI2_1.1.2001.500 (cluster)   ZOSTERA_JGI2_1.1.2001.4500 (coordinate)
Sequence of small RNA read
Bulk Query
Keyword for genes/proteins or repeats


Query by Chromosome Position

If you know the start and/or end of your genomic region, please enter one or both coordinates here to go directly to our chromosome viewer. If you only enter one coordinate, we use a default size of 100 kb for the viewer.