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Annotated species Solanum lycopersicum Annotation built on International Tomato Annotation Group (ITAG) 2.0 Total number of genes 34,727
Library type Small RNA Total bp in genome 781,666,411 Protein coding 34,727
Total number of libraries 3 Total chrs or contigs 13 Transposon related 0

This website and database was built in collaboration with the Tomato Genome Sequencing Consortium.

Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.

Basic Queries

Please enter specific information to retrieve data.
Adjust libraries/reads to display on the control panel (optional).

Protein or gene ID
Bulk Query

e.g. Solyc01g005000_2
Cluster or coordinate ID
Bulk Query

e.g. SLY_ITAG2.1.2001.500 (cluster)   SLY_ITAG2.1.2001.4500 (coordinate)
Sequence of small RNA read
Bulk Query
Keyword for genes/proteins or repeats

e.g. MIRNA  LTR

Query by Chromosome Position

Click on a region of any chromosome for which you would like to retrieve the map. Because of the size of chromosomes, clicking on the diagram below will take you to a second map where you can refine the position. Note that if the genome has a mix of both chromosomes and small contigs or scaffolds, we only show images for the defined chromosomes, and contigs must be accessed via their ID.

0 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 70,000,00070,000,000 - 80,000,00080,000,000 - 90,000,00090,000,000 - 90,304,2440 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 49,918,29449,918,294 - 49,918,29449,918,294 - 49,918,29449,918,294 - 49,918,29449,918,294 - 49,918,29449,918,294 - 49,918,2940 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 64,840,71464,840,714 - 64,840,71464,840,714 - 64,840,71464,840,714 - 64,840,7140 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 64,064,31264,064,312 - 64,064,31264,064,312 - 64,064,31264,064,312 - 64,064,3120 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 65,021,43865,021,438 - 65,021,43865,021,438 - 65,021,43865,021,438 - 65,021,4380 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 46,041,63646,041,636 - 46,041,63646,041,636 - 46,041,63646,041,636 - 46,041,63646,041,636 - 46,041,63646,041,636 - 46,041,6360 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 65,268,62165,268,621 - 65,268,62165,268,621 - 65,268,62165,268,621 - 65,268,6210 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 63,032,65763,032,657 - 63,032,65763,032,657 - 63,032,65763,032,657 - 63,032,6570 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 67,662,09167,662,091 - 67,662,09167,662,091 - 67,662,09167,662,091 - 67,662,0910 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 64,834,30564,834,305 - 64,834,30564,834,305 - 64,834,30564,834,305 - 64,834,3050 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 53,386,02553,386,025 - 53,386,02553,386,025 - 53,386,02553,386,025 - 53,386,02553,386,025 - 53,386,0250 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 65,486,25365,486,253 - 65,486,25365,486,253 - 65,486,25365,486,253 - 65,486,2530 - 10,000,00010,000,000 - 20,000,00020,000,000 - 21,805,82121,805,821 - 21,805,82121,805,821 - 21,805,82121,805,821 - 21,805,82121,805,821 - 21,805,82121,805,821 - 21,805,82121,805,821 - 21,805,82121,805,821 - 21,805,821 Chromosome image

If you know the start and/or end of your genomic region, please enter one or both coordinates here to go directly to our chromosome viewer. If you only enter one coordinate, we use a default size of 100 kb for the viewer.