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Annotated species Fragaria ananassa Annotation built on Strawberry Genome Sequencing Consortium 1.1 Total number of genes 32,831
Library type PARE Total bp in genome 207,044,417 Protein coding 32,831
Total number of libraries 3 Total chrs or contigs 9 Transposon related 0

This site contains public PARE data for wild strawberry (Fragaria vesca). The initial set of libraries were published by Xia et al. Plant Physiol. (2015) doi: 10.1104/pp.15.00253.

Some data contributed by: Rui Xia (South China Agricultural University), Zhongchi Liu (University of Maryland).

Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.

Basic Queries

Please enter specific information to retrieve data.
Adjust libraries/reads to display on the control panel (optional).

Protein or gene ID
Bulk Query

e.g. gene10021-v1.0-hybrid
Cluster or coordinate ID
Bulk Query

e.g. STRWBRY_GDR1.1.2001.500 (cluster)   STRWBRY_GDR1.1.2001.4500 (coordinate)
Sequence of PARE read
Bulk Query
Keyword for genes/proteins or repeats

e.g. MIRNA  LTR

Query by Chromosome Position

Click on a region of any chromosome for which you would like to retrieve the map. Because of the size of chromosomes, clicking on the diagram below will take you to a second map where you can refine the position. Note that if the genome has a mix of both chromosomes and small contigs or scaffolds, we only show images for the defined chromosomes, and contigs must be accessed via their ID.

0 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 20,954,95720,954,957 - 20,954,95720,954,957 - 20,954,95720,954,957 - 20,954,9570 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 24,538,92624,538,926 - 24,538,92624,538,926 - 24,538,92624,538,926 - 24,538,9260 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 32,069,52432,069,524 - 32,069,5240 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 27,214,54127,214,541 - 27,214,54127,214,541 - 27,214,5410 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 28,438,56828,438,568 - 28,438,56828,438,568 - 28,438,5680 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 35,000,00035,000,000 - 39,347,5940 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 22,556,66622,556,666 - 22,556,66622,556,666 - 22,556,66622,556,666 - 22,556,6660 - 5,000,0005,000,000 - 10,000,00010,000,000 - 11,767,95011,767,950 - 11,767,95011,767,950 - 11,767,95011,767,950 - 11,767,95011,767,950 - 11,767,95011,767,950 - 11,767,9500 - 155,691155,691 - 155,691155,691 - 155,691155,691 - 155,691155,691 - 155,691155,691 - 155,691155,691 - 155,691155,691 - 155,691 Chromosome image

If you know the start and/or end of your genomic region, please enter one or both coordinates here to go directly to our chromosome viewer. If you only enter one coordinate, we use a default size of 100 kb for the viewer.