About This Database    FAQs

Annotated species Solanum tuberosum Annotation built on International Tomato Annotation Group (ITAG) PGSC_DM_v3.4 Total number of genes 35,648
Library type small RNA Total bp in genome 724,134,613 Protein coding 35,648
Total number of libraries 72 Total chrs or contigs 12 Transposon related 0

This website and database was built using the genome from the Potato Genome Sequencing Consortium, with data from public sources including our comparative sequencing project.

Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.

Basic Queries

Please enter specific information to retrieve data.
Adjust libraries/reads to display on the control panel (optional).

Protein or gene ID
Bulk Query

e.g. chr01_1
Cluster or coordinate ID
Bulk Query

e.g. STU_ITAG1.1.2001.500 (cluster)   STU_ITAG1.1.2001.4500 (coordinate)
Sequence of small RNA read
Bulk Query
e.g. TTTCGTTTTAGGCCTCAAA
Keyword for genes/proteins or repeats

e.g. MIRNA  LTR

Query by Chromosome Position

Click on a region of any chromosome for which you would like to retrieve the map. Because of the size of chromosomes, clicking on the diagram below will take you to a second map where you can refine the position. Note that if the genome has a mix of both chromosomes and small contigs or scaffolds, we only show images for the defined chromosomes, and contigs must be accessed via their ID.

0 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 70,000,00070,000,000 - 80,000,00080,000,000 - 90,000,00090,000,000 - 97,274,4810 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 70,000,00070,000,000 - 70,014,71170,014,711 - 70,014,71170,014,711 - 70,014,7110 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 48,933,88748,933,887 - 48,933,88748,933,887 - 48,933,88748,933,887 - 48,933,88748,933,887 - 48,933,88748,933,887 - 48,933,8870 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 66,795,17966,795,179 - 66,795,17966,795,179 - 66,795,17966,795,179 - 66,795,1790 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 61,096,54461,096,544 - 61,096,54461,096,544 - 61,096,54461,096,544 - 61,096,5440 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 58,354,45458,354,454 - 58,354,45458,354,454 - 58,354,45458,354,454 - 58,354,45458,354,454 - 58,354,4540 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 53,477,89153,477,891 - 53,477,89153,477,891 - 53,477,89153,477,891 - 53,477,89153,477,891 - 53,477,8910 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 44,138,28444,138,284 - 44,138,28444,138,284 - 44,138,28444,138,284 - 44,138,28444,138,284 - 44,138,28444,138,284 - 44,138,2840 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 54,214,02854,214,028 - 54,214,02854,214,028 - 54,214,02854,214,028 - 54,214,02854,214,028 - 54,214,0280 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 53,916,22653,916,226 - 53,916,22653,916,226 - 53,916,22653,916,226 - 53,916,22653,916,226 - 53,916,2260 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 47,673,17647,673,176 - 47,673,17647,673,176 - 47,673,17647,673,176 - 47,673,17647,673,176 - 47,673,17647,673,176 - 47,673,1760 - 10,000,00010,000,000 - 20,000,00020,000,000 - 30,000,00030,000,000 - 40,000,00040,000,000 - 50,000,00050,000,000 - 60,000,00060,000,000 - 68,245,75268,245,752 - 68,245,75268,245,752 - 68,245,75268,245,752 - 68,245,752 Chromosome image

If you know the start and/or end of your genomic region, please enter one or both coordinates here to go directly to our chromosome viewer. If you only enter one coordinate, we use a default size of 100 kb for the viewer.