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Annotated species Lactuca sativa Annotation built on UC Davis Genome Center 2 Total number of genes 38,918
Library type Small RNA Total bp in genome 2,383,281,025 Protein coding 38,918
Total number of libraries 10 Total chrs or contigs 21,686 Transposon related 0

These data were generated to annotate small RNAs and their mRNA targets in the lettuce genome v. 2 (the latest version is also available). The results were published in Nature Communications in 2017: Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce. Reyes-Chin-Wo et al. 8:14953. doi: 10.1038/ncomms14953

Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.

Basic Queries

Please enter specific information to retrieve data.
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Protein or gene ID
Bulk Query

e.g. Lsat_1_v5_gn_9_58540
Cluster or coordinate ID
Bulk Query

e.g. LETTUCE_LGR2.1.2001.500 (cluster)   LETTUCE_LGR2.1.2001.4500 (coordinate)
Sequence of small RNA read
Bulk Query
Keyword for genes/proteins or repeats

e.g. MIRNA  LTR

Query by Chromosome Position

If you know the start and/or end of your genomic region, please enter one or both coordinates here to go directly to our chromosome viewer. If you only enter one coordinate, we use a default size of 100 kb for the viewer.