| Annotated species | Lactuca sativa | Annotation built on | UC Davis Genome Center 2 | Total number of genes | 38,918 |
|---|---|---|---|---|---|
| Library type | small RNA | Total bp in genome | 2,383,281,025 | Protein coding | 38,918 |
| Total number of libraries | 10 | Total chrs or contigs | 21,686 | Transposon related | 0 |
These data were generated to annotate small RNAs and their mRNA targets in the lettuce genome v. 2 (the latest version is also available). The results were published in Nature Communications in 2017: Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce. Reyes-Chin-Wo et al. 8:14953. doi: 10.1038/ncomms14953
Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.
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| Protein or gene ID
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e.g. Lsat_1_v5_gn_9_58540 |
| Cluster or coordinate ID
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e.g. LETTUCE_LGR2.1.2001.500 (cluster)
LETTUCE_LGR2.1.2001.4500 (coordinate)
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| Sequence of small RNA read
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