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Annotated species Lactuca sativa Annotation built on UC Davis Genome Center 2 Total number of genes 38,918
Library type Small RNA Total bp in genome 2,383,281,025 Protein coding 38,918
Total number of libraries 10 Total chrs or contigs 21,686 Transposon related 0

These data were generated to annotate small RNAs and their mRNA targets in the lettuce genome v. 2 (the latest version is also available). The results were published in Nature Communications in 2017: Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce. Reyes-Chin-Wo et al. 8:14953. doi: 10.1038/ncomms14953

Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.

Basic Queries

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Protein or gene ID
Bulk Query

e.g. Lsat_1_v5_gn_9_58540
Cluster or coordinate ID
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e.g. LETTUCE_LGR2.1.2001.500 (cluster)   LETTUCE_LGR2.1.2001.4500 (coordinate)
Sequence of small RNA read
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Keyword for genes/proteins or repeats


Query by Chromosome Position

If you know the start and/or end of your genomic region, please enter one or both coordinates here to go directly to our chromosome viewer. If you only enter one coordinate, we use a default size of 100 kb for the viewer.