About Next-Gen Sequence Databases

The database and the web pages that you see were produced by the Meyers lab at the Donald Danforth Plant Science Center. These data are freely available, but we ask that you cite this web page or related publications; most libraries have been published as part of specific papers, but the best general citation for the website is Nakano et al. (2019) Plant Physiology. We would also like to know that you have found our data to be useful, so please if you use data from this page. Please note, however, that the availability of this data and information does not constitute scientific publication; we request that you respect our right to publish on the complete data sets.

Listed below are the different data sets that we have generated and the sites that we have developed for accessing these data.

SBS Databases
Organism small RNA DBs RNA-seq DBs PARE DBs mRNA DGE DBs MethylC-seq DBs ChIP DBs
Mouseover each database type in the header row to display its description.
Ae_tauschii logo Aegilops tauschii  link   link - 2   link 
Amborella logo Amborella trichopoda  link   link 
Apple logo Malus domestica  link 
Arabidopsis logo Arabidopsis thaliana  link   link - 2   link - 3   link - EV   link - hen1   link   link   link 
Asparagus logo Asparagus officinalis  link   link   link 
Bamboo logo Phyllostachys edulis  link 
Banana logo Musa acuminata  link 
Brachypodium logo Brachypodium distachyon  link   link - 2   link   link - 2 
Brassica_rapa logo Brassica rapa  link 
Cassava logo Manihot esculenta  link 
Chicken logo Gallus gallus  link 
Common_bean logo Phaseolus vulgaris  link 
Date_palm logo Phoenix dactylifera  link 
Grape logo Vitis vinifera  link - Atlas   link - GxE 
Lemna logo Lemna gibba  link 
Lettuce logo Lactuca sativa  link   link 
Litchi logo Litchi chinensis  link 
Magnaporthe logo Magnaporthe oryzae  link   link 
Maize logo Zea mays  link   link - 2   link - 3   link - 4   link - dcl5   link   link - 2   link - 3   link - 4   link - dcl5   link 
Medicago logo Medicago truncatula  link   link - 2   link 
Mimulus logo Mimulus guttatus  link 
Orange logo Citrus sinensis  link 
Orchid logo Phalaenopsis equestris  link 
Papaya logo Carica papaya  link 
Peach logo Prunus persica  link 
Petunia_axillaris logo Petunia axillaris  link 
Petunia_inflata logo Petunia inflata  link 
Pineapple logo Ananas comosus  link   link - 2   link 
Poplar logo Populus trichocarpa  link 
Potato logo Solanum tuberosum  link   link 
Rice logo Oryza sativa  link   link - 2   link - 3   link - 4   link   link   link   link   link 
Rice_glab logo Oryza glaberrima  link   link 
Setaria logo Setaria viridis  link 
Sorghum logo Sorghum bicolor  link 
Soybean logo Glycine max  link   link - USB   link   link - USB   link - USB 
Spirodela logo Spirodela polyrhiza  link   link 
Strawberry logo Fragaria ananassa  link 
Streptochaeta logo Streptochaeta angustifolia  link 
Tomato logo Solanum lycopersicum  link 
Ustilago logo Ustilago maydis  link 
Wheat logo Triticum aestivum  link   link 
Zostera logo Zostera marina  link 

MPSS Databases
Organism small RNA & mRNA DGE DBs mRNA DGE DBs
The data in these databases are from an obsolete technology.
Arabidopsis logo Arabidopsis thaliana  link    
Magnaporthe logo Magnaporthe oryzae    link 
Rice logo Oryza sativa  link   
Grape logo Vitis vinifera    link